Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02544 ATGGATTTGGAGACATTCCACCTTCCAAGTAGAAGTAATAGAGTTCCACAATCCACTCCGGAGATAATCAACCTCGACACCTATCGCTTATCCGGCAAGCGAGTCATCTCCGAGCAACTCTCTAATATTCCTAGAGTCGCCAGTGTCTCCGAGGTCATTGACCTTTCTGATGAAGAAGACGACGATGACATTAAGATCCTCAATTTCATTCCCAAAAGTACTTCATTCGGAAAACGCAAAAGAATCGATAAAGGAGAGTCTTCAAATTCAAGAAACGCGCCATTTGTTTGCGAAATCTGCACGGACACTAAAACAATGAGGGACGCTTTTTACATCAGTGGTTGCTCTCACGTTTATTGCTCCGATTGCGTGGCAATGTACATCTGTTCTAAACTTGATGATAACATCACAAATATTGGGTGTCCAGTTCCCGGGTGCAGTGGTTTATTAGAACCGGAGTATTGCTATTCAATTCTTAAGCCCGAGGTTTTTGAACGATGGGGTAAGGCGTTGTGCGAGGCTTTGATTGATGTATCGGAGAAGTTTTATTGTCCTTTTGCTGACTGCTCCGCTCTTTTGATCAATGATGGAACGGAGGCTGTTGGGAATACTAAATGTCCTCATTGTAATAGGATGTTTTGTGCACAATGCAAGGTTCCATGGCATAACGGAATCGAATGCAGCGAGTTCGAGAAACTACACACGGACGAGAGGGGGAGAGAAGATGTTATGTTGGTTAACCTTGCGAAGAAAAAGAATTGGCAGCGATGCCCCAAATGCAGAATTTATGTTGCCAGAAATAGGGGCTGCAATACCATCTCCTGCAGGTGCGGTTGTCGTTTTTGTTACAAATGTGGTTATTTATCCGGTATGTGTGTCTGTTATGAGCTGAAGACAAGAGGAATTCCCTCCACGGTTTCCATTGGTGGAAATTTCCCTCTCCACCCTACAAATATAGCTCAGATATATCAACAAAATTTCACCGGTGGAATTTTCACGAGTGAAAATTTTCCTAATAGGAATCCTCCCAATTCGTATAAACCACAACAACAAAATTTCTTTGGAATTTCCGGAGGAGTTTCCACAAGTGGAAATTTTCCTAACAGGAACCATCCCTATTCGTATAAACCACAACAACCAAATTACTCTAGAATTTCCGGAGGAGTTTCCACCGATGGAGTTTTCACCGGTGGAAATTTTCCTAATTGGAACCCTCCCTGCTCGTATAAACCACAACAACAATTTTCCTCAGAAATTTCTGGAGGAGTTTCCACTAGTGGAACTTTCCCTTATGGTTACCCCATCAATTCGGCTCAACCACGACAACAAATTCCCAACGGAGTTGCCTATACGGTTCAACAACAAGAACAAATTCCCTCCATAGGTTCAACAACAGGAACTTTGCCTCATGTGTTTGGATAG 1422 0.4283 MDLETFHLPSRSNRVPQSTPEIINLDTYRLSGKRVISEQLSNIPRVASVSEVIDLSDEEDDDDIKILNFIPKSTSFGKRKRIDKGESSNSRNAPFVCEICTDTKTMRDAFYISGCSHVYCSDCVAMYICSKLDDNITNIGCPVPGCSGLLEPEYCYSILKPEVFERWGKALCEALIDVSEKFYCPFADCSALLINDGTEAVGNTKCPHCNRMFCAQCKVPWHNGIECSEFEKLHTDERGREDVMLVNLAKKKNWQRCPKCRIYVARNRGCNTISCRCGCRFCYKCGYLSGMCVCYELKTRGIPSTVSIGGNFPLHPTNIAQIYQQNFTGGIFTSENFPNRNPPNSYKPQQQNFFGISGGVSTSGNFPNRNHPYSYKPQQPNYSRISGGVSTDGVFTGGNFPNWNPPCSYKPQQQFSSEISGGVSTSGTFPYGYPINSAQPRQQIPNGVAYTVQQQEQIPSIGSTTGTLPHVFG 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02544 473 SMART ibrneu5 165 227 IPR002867 GO:0008270
Trre4g02544 473 Pfam IBR domain, a half RING-finger domain 171 227 IPR002867 GO:0008270
Trre4g02544 473 SUPERFAMILY RING/U-box 238 291 - -
Trre4g02544 473 CDD BRcat_RBR_unk 178 230 - -
Trre4g02544 473 ProSitePatterns Zinc finger RING-type signature. 115 124 IPR017907 -
Trre4g02544 473 CDD Rcat_RBR_unk 253 286 - -
Trre4g02544 473 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 300 IPR031127 GO:0004842|GO:0016567
Trre4g02544 473 SUPERFAMILY RING/U-box 93 177 - -
Trre4g02544 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 179 IPR013083 -
Trre4g02544 473 ProSiteProfiles TRIAD supradomain profile. 93 329 IPR044066 -
Trre4g02544 473 SUPERFAMILY RING/U-box 171 232 - -
Trre4g02544 473 ProSiteProfiles Zinc finger RING-type profile. 97 143 IPR001841 -
Trre4g02544 473 Gene3D - 224 299 - -
Trre4g02544 473 FunFam RBR-type E3 ubiquitin transferase 92 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02544 Trre-Chr4 26205275 26210190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02544 97 286 C3H Transcription Factor Family AT2G19610 29.000 1.35e-19 89.0