Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02543 ATGGATTTGGAGACATTCCACCTTCCAAGTAGAAGTAATAGAGTTCCACAATCCACTCCGGAGATAATCAACCTCGACACCTATCGCTTATCCGGCAAGCGAGTCATCTCCGAGCATTGGGTTGATAGAATTCCCTCTAAAGTTTTGCCCAGACTCTCTAATATTCCTAGAGTCGCCAGTGTCTCCGAGGTCATTGACCTTTCTGATGAAGAAGACGACGATGACATTAAGATCCTCAATTTCATTCCCAAAAGTACTTCATTCGGAAAACGCAAAAGAATCGATAAAGGAGAGTCTTCAAATTCAAGAAACGCGCCATTTGTTTGCGAAATCTGCACGGACACTAAAACAATGAGGGACGCTTTTTACATCAGTGGTTGCTCTCACGTTTATTGCTCCGATTGCGTGGCAATGTACATCTGTTCTAAACTTGATGATAACATCACAAATATTGGGTGTCCAGTTCCCGGGTGCAGTGGTTTATTAGAACCGGAGTATTGCTATTCAATTCTTAAGCCCGAGGTTTTTGAACGATGGGGTAAGGCGTTGTGCGAGGCTTTGATTGATGTATCGGAGAAGTTTTATTGTCCTTTTGCTGACTGCTCCGCTCTTTTGATCAATGATGGAACGGAGGCTGTTGGGAATACTAAATGTCCTCATTGTAATAGGATGTTTTGTGCACAATGCAAGGTTCCATGGCATAACGGAATCGAATGCAGCGAGTTCGAGAAACTACACACGGACGAGAGGGGGAGAGAAGATGTTATGTTGGTTAACCTTGCGAAGAAAAAGAATTGGCAGCGATGCCCCAAATGCAGAATTTATGTTGCCAGAAATAGGGGCTGCAATACCATCTCCTGCAGGTGCGGTTGTCGTTTTTGTTACAAATGTGGTTATTTATCCGGTATGTGTGTCTGTTATGAGCTGAAGACAAGAGGAATTCCCTCCACGGTTTCCATTGGTGGAAATTTCCCTCTCCACCCTACAAATATAGCTCAGATATATCAACAAAATTTCACCGGTGGAATTTTCACGAGTGAAAATTTTCCTAATAGGAATCCTCCCAATTCGTATAAACCACAACAACAAAATTTCTTTGGAATTTCCGGAGGAGTTTCCACAAGTGGAAATTTTCCTAACAGGAACCATCCCTATTCGTATAAACCACAACAACCAAATTACTCTAGAATTTCCGGAGGAGTTTCCACCGATGGAGTTTTCACCGGTGGAAATTTTCCTAATTGGAACCCTCCCTGCTCGTATAAACCACAACAACAATTTTCCTCAGAAATTTCTGGAGGAGTTTCCACTAGTGGAACTTTCCCTTATGGTTACCCCATCAATTCGGCTCAACCACGACAACAAATTCCCAACGGAGTTGCCTATACGGTTCAACAACAAGAACAAATTCCCTCCATAGGTTCAACAACAGGAACTTTGCCTCATGTGTTTGGATAG 1458 0.428 MDLETFHLPSRSNRVPQSTPEIINLDTYRLSGKRVISEHWVDRIPSKVLPRLSNIPRVASVSEVIDLSDEEDDDDIKILNFIPKSTSFGKRKRIDKGESSNSRNAPFVCEICTDTKTMRDAFYISGCSHVYCSDCVAMYICSKLDDNITNIGCPVPGCSGLLEPEYCYSILKPEVFERWGKALCEALIDVSEKFYCPFADCSALLINDGTEAVGNTKCPHCNRMFCAQCKVPWHNGIECSEFEKLHTDERGREDVMLVNLAKKKNWQRCPKCRIYVARNRGCNTISCRCGCRFCYKCGYLSGMCVCYELKTRGIPSTVSIGGNFPLHPTNIAQIYQQNFTGGIFTSENFPNRNPPNSYKPQQQNFFGISGGVSTSGNFPNRNHPYSYKPQQPNYSRISGGVSTDGVFTGGNFPNWNPPCSYKPQQQFSSEISGGVSTSGTFPYGYPINSAQPRQQIPNGVAYTVQQQEQIPSIGSTTGTLPHVFG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02543 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 191 IPR013083 -
Trre4g02543 485 Pfam IBR domain, a half RING-finger domain 183 239 IPR002867 GO:0008270
Trre4g02543 485 SUPERFAMILY RING/U-box 250 303 - -
Trre4g02543 485 SMART ibrneu5 177 239 IPR002867 GO:0008270
Trre4g02543 485 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 75 304 IPR031127 GO:0004842|GO:0016567
Trre4g02543 485 ProSitePatterns Zinc finger RING-type signature. 127 136 IPR017907 -
Trre4g02543 485 SUPERFAMILY RING/U-box 183 244 - -
Trre4g02543 485 CDD BRcat_RBR_unk 190 242 - -
Trre4g02543 485 ProSiteProfiles Zinc finger RING-type profile. 109 155 IPR001841 -
Trre4g02543 485 CDD Rcat_RBR_unk 265 298 - -
Trre4g02543 485 ProSiteProfiles TRIAD supradomain profile. 105 341 IPR044066 -
Trre4g02543 485 SUPERFAMILY RING/U-box 105 189 - -
Trre4g02543 485 FunFam RBR-type E3 ubiquitin transferase 104 190 - -
Trre4g02543 485 Gene3D - 236 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02543 Trre-Chr4 26205275 26210190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02543 109 298 C3H Transcription Factor Family AT2G19610 29.000 1.26e-19 89.0