Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02531 ATGAGTGGCCAGAAAATTGATCGTGAGAATTCTATTGGTGGAAAGAAAATTGATCGCCTTGCTGATATATCACCTGAGAAGGATTCATGGCATATTATTGTTCGTGTCATTCGTATGTGGAAGGTTCCTGCCTTTCAGAAACCGGCGGAAACTTACACTCTGGAAATGGTTTTGATCGATGAAGATGGTACTAAGATTCATGCAACAATTCGGAAACAGTTCCTGTATATGTTCCTCTCCAGATTTGAAGAGGGCGGAGTTTATCAGATGTCCAGTTTTTCTGTTTCTCCTAATGTTGGAGTGTATCGATCTACTGATCATCCTTACAAGTTAATTTTCCAATTGAAGACGAAGGTTCATCTTAGTTCCAGTCTGAAGATTCCTAAGTACGGTTTTAAATTCACAAAGATGGCTGAAATATCTGCTCATGATCGCGATTATGAGTATTTAGTTGATGTTCTTGGGTTGGTGACTGGTTTGTCTGAAGAAAGGGAGTATCTTAGGGATGGTAAGATAACAAAGATGGTTGTTGTTGAGTTGAGCGATGATAGTGGAAAGTGTGAGTGTGCCCTTTTTGGTGATTATGCTGAAGATCTGAAGAAGATGATTGGAATGGCTGTTGGTGGCCTGCCGGTTGTTGCAATTCAATTTGCAAAGCTCAAAATTTTTAGAGAGAAAGCATCACCTCAGAATGTCATTAATACCACTAAAATACATGTTAATCCTGATGTGCCTGAGGTTAAGGCATTGAAGGATGGTCTTGCTGTTAGTGGTATTGATTGTTCGGGCGATGTTGTTGTTATTGGTTCTCGATCAAAGCCTTCTTTTGAGGAGGAATTTCTTCGTATGCATCCCAAAAAATCAATTGGTCAGCTTCTTGATTGTGTTGAAGATGGTGTGTTCTCTGTTTACGGTTTCATAAGTGGTCTGATGGATGGCCAGGCCTGGTGGTATCCAACCTGCCGGTGCCACAGGAGTGTTATTGCTGACTCTGGGGCTTACTATTGCAAAGGCTGTGATAAGCATGTTTTCCATATTGTTCCGAGGTTGGACATAGTCTATTTGCATGTTGTTGACAATGCTTCTTCGTGTGTCTTGCTTCTGTTTGACAATGATATGAATTACCTATTTGAGAAATCTTGTGCTTCATTCGTTGCTGCATCGAAGCGTCAGAGCTCTGTGGGTTATCCTAAGGAGTTTGATTGTTTGGTTGGTATGAAAATGCTTTTGATTGTTGACAAGGGTTCTCCTGCCGGTTCCATAACAGACGGCTCATTTAGAGTCAAGCGTGTCTGTGTTGATCCTGATGTAATTGAAAAATATCTGGCTGAAGGTTTTGATGTTTCTCCTGCTAAGGTCGTATGTCAACCTATTATTGATCTTGATGAGTCCGATGGATGTGATGATGTTGATGTTGTTGAGGACTCGCAGGCTAATGCCTTTGTCGATGAACTTATTGTTTCTCCCCCCGTGCCTGAGGCTGCTAAGAAGCCAACTAGGGGTCGGAAGTCGTTTAAAGGTATCAAGAGGAACCTGTCGAAGTTGTTTGCTGAGGCTGATGCGATTGATCGTGGTGTGCCTTTGAAAGCTGTTAAACTGGAGAAGGAATGA 1611 0.4178 MSGQKIDRENSIGGKKIDRLADISPEKDSWHIIVRVIRMWKVPAFQKPAETYTLEMVLIDEDGTKIHATIRKQFLYMFLSRFEEGGVYQMSSFSVSPNVGVYRSTDHPYKLIFQLKTKVHLSSSLKIPKYGFKFTKMAEISAHDRDYEYLVDVLGLVTGLSEEREYLRDGKITKMVVVELSDDSGKCECALFGDYAEDLKKMIGMAVGGLPVVAIQFAKLKIFREKASPQNVINTTKIHVNPDVPEVKALKDGLAVSGIDCSGDVVVIGSRSKPSFEEEFLRMHPKKSIGQLLDCVEDGVFSVYGFISGLMDGQAWWYPTCRCHRSVIADSGAYYCKGCDKHVFHIVPRLDIVYLHVVDNASSCVLLLFDNDMNYLFEKSCASFVAASKRQSSVGYPKEFDCLVGMKMLLIVDKGSPAGSITDGSFRVKRVCVDPDVIEKYLAEGFDVSPAKVVCQPIIDLDESDGCDDVDVVEDSQANAFVDELIVSPPVPEAAKKPTRGRKSFKGIKRNLSKLFAEADAIDRGVPLKAVKLEKE 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02531 536 SUPERFAMILY Nucleic acid-binding proteins 18 123 IPR012340 -
Trre4g02531 536 SUPERFAMILY Nucleic acid-binding proteins 132 258 IPR012340 -
Trre4g02531 536 SUPERFAMILY Nucleic acid-binding proteins 297 412 IPR012340 -
Trre4g02531 536 Pfam Domain of unknown function DUF223 55 138 IPR003871 -
Trre4g02531 536 Gene3D - 126 258 IPR012340 -
Trre4g02531 536 CDD RPA1_DBD_B_like 152 251 - -
Trre4g02531 536 PANTHER OS03G0429900 PROTEIN 21 411 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre4g02531 536 Pfam Replication factor-A C terminal domain 301 389 IPR013955 -
Trre4g02531 536 CDD RPA1_DBD_A_like 32 119 - -
Trre4g02531 536 Gene3D - 15 121 IPR012340 -
Trre4g02531 536 Gene3D - 279 416 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02531 Trre-Chr4 25984311 25986562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02531 15 372 Core DNA Replication Machinery Family AT5G08020 25.464 5.29e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02531 - - tpra:123904946 545.428