Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02506 ATGATGAAGACAGGTCCGTGTATGCATTGCGGAATTAATTCAACTCCACTTTGGCGTAATGGACCAAATGAAAAGCCCGTTTTATGCAATGCTTGCGGGTCTCATTTCAAGGCCAGAGGAACCCTTGAAAACTATCTCCCTAGGATTGTCCAACAAGCTCAATTGTTAGAGCATAACAATCAAGAAAAATGTGAACACAATGTTCAACTTAACATTGATGAAGCTGCATCTGAAAAAAGTTTCGAGTTTTCAACTTCATCTTCTTCAGGTGTGACCAATACAAATTTATGGAACACCGAAATCTCTCAAAAGAAACATTCATTTGGAAGGCGGGAGAGGGAGACATTGACACCAATGGAGGAGTTCCAGAAAGAACTGCTCAGTCTATATGAATCTGAAAAACAATCCAAAGAATTATCTCCAGACGATATTTTGTTGTATGATAATGTGAACAACTTCATACCCAATAACGAGATAGGTCTTGGATGCACTCTCTTGAATGCAAATGTCACTTCTACTGATGAAGACCAACGGAAACCATGA 543 0.3923 MMKTGPCMHCGINSTPLWRNGPNEKPVLCNACGSHFKARGTLENYLPRIVQQAQLLEHNNQEKCEHNVQLNIDEAASEKSFEFSTSSSSGVTNTNLWNTEISQKKHSFGRRERETLTPMEEFQKELLSLYESEKQSKELSPDDILLYDNVNNFIPNNEIGLGCTLLNANVTSTDEDQRKP 180
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02506 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 44 - -
Trre4g02506 180 CDD ZnF_GATA 6 41 IPR000679 GO:0006355|GO:0043565
Trre4g02506 180 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Trre4g02506 180 PANTHER OSJNBB0038F03.10 PROTEIN 7 174 IPR044589 -
Trre4g02506 180 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Trre4g02506 180 Gene3D - 2 69 IPR013088 GO:0006355|GO:0008270
Trre4g02506 180 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Trre4g02506 180 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre4g02506 Trre-Chr4 25579962 25581977 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02506 1 166 C2C2-Gata Transcription Factor Family AT4G17570 29.358 2.43e-20 85.5
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre4g02506 GATA 4.3e-13 CL0167