Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02486 ATGCCTCGGAGAAATGCTACCTTACCAATCCGTTTCTTCAAGATCATCCTCCAAACTAATCTTCAAACACTTAAAATACCAAATAAGTTTACAAGGAGACATGGAGTTGGTTTATCAAATCCAGTGTTGATTGAGCCTCCTGATGGCACTAAATGGAACGTTTATTGGAAAGAAATCAATGGTGAGATTTGGTTTGAAAAGGGTTGGAAAACTTTTACTCAAAATTACTCTCTAGAACATGGTTGTTTAGTTGTGTTTGAATATGAACAAGGGACTTCAAAATTCCATGTACTCATACTTGGCCAGAATGCAGTAGAAATAGACTATGATAATAATGATGAATCAGTTCAGATTTTGGATGAAAAGAACAATAGTATTATTGATCATAGTGATGACGAATCAGTTGAGGTTTTGGACGAATGGCTTAATCGGAAGAAGACTAGACAGAGTTTGCCATTAGTTTCTCCTCGACCACATAAGAAAGTTAGAGGTGAGATTAAGAAGACTAGTGAAAGAACAGCTTCATCAATGAATTGGCCAAAGGAAGCTAAAGCTCAGGAAGTAGCTAAAAATTTCAAATCAAGCAATCCTTTTTTCACAATTCTCATAAAGCCTATTCATCTGGCAGGAAATCGGCTGCATGTACCAAGTTTAAAAGGTGTTATTGAGAACATAGACATGTATGTGATGCTGAAGATTGGAAAAAGATCATGGAATGTGAAACTGCTTCGTTGTTATGACGATGGCCGTCGCTGCCTTTCAGCCGGTTGGTCATTGTTTGCAAGTGAAAGTGGACTGCAACCAGGAGATGTTTGTGTATTTGAACTGATAAACAAGAATGATTTAGTTTTTAAAGTTCATGTTTTCTTAAAGGGACAAAATTAA 885 0.365 MPRRNATLPIRFFKIILQTNLQTLKIPNKFTRRHGVGLSNPVLIEPPDGTKWNVYWKEINGEIWFEKGWKTFTQNYSLEHGCLVVFEYEQGTSKFHVLILGQNAVEIDYDNNDESVQILDEKNNSIIDHSDDESVEVLDEWLNRKKTRQSLPLVSPRPHKKVRGEIKKTSERTASSMNWPKEAKAQEVAKNFKSSNPFFTILIKPIHLAGNRLHVPSLKGVIENIDMYVMLKIGKRSWNVKLLRCYDDGRRCLSAGWSLFASESGLQPGDVCVFELINKNDLVFKVHVFLKGQN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02486 294 SMART B3_2 198 292 IPR003340 GO:0003677
Trre4g02486 294 SMART B3_2 12 103 IPR003340 GO:0003677
Trre4g02486 294 CDD B3_DNA 11 100 IPR003340 GO:0003677
Trre4g02486 294 SUPERFAMILY DNA-binding pseudobarrel domain 192 289 IPR015300 -
Trre4g02486 294 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Trre4g02486 294 ProSiteProfiles B3 DNA-binding domain profile. 198 292 IPR003340 GO:0003677
Trre4g02486 294 Gene3D - 7 104 IPR015300 -
Trre4g02486 294 PANTHER B3 DOMAIN-CONTAINING 11 287 - -
Trre4g02486 294 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Trre4g02486 294 CDD B3_DNA 198 289 IPR003340 GO:0003677
Trre4g02486 294 Gene3D - 156 291 IPR015300 -
Trre4g02486 294 Pfam B3 DNA binding domain 20 99 IPR003340 GO:0003677
Trre4g02486 294 Pfam B3 DNA binding domain 198 289 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02486 Trre-Chr4 25002305 25003749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02486 8 289 B3 DNA Binding Superfamily AT3G18990 27.697 2.28e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre4g02486 B3 4.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02486 - - tpra:123887513 382.104