Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02478 ATGAAGGCTCCTTCTAATGGTTACTTGCCTAATTCTGGTGAAGGTGAAAGGAAAGCCATCAATTCGGAGTTATGGCATGCTTGTGCCGGGCCGTTGGTTTCTATACCTCCCGTTGGAAGTCTTGTTGTTTACTTTCCTCAAGGACACAGCGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCAGATTTCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCACTACATGCTGACCCTGAAACTGATGAGGTATACGCGCAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATGCTTGCTTCAGACATGGGACTAAAACAAAACCAGCAACCAACCGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACTAGCACTCATGGTGGATTTTCAGTGCCTCGTAGAGCTGCCGAGAAAATATTCCCACCTCTGGACTTTTCAATGCAACCACCAGCTCAAGAAATAGTTGCCAAAGATTTGCATGACACTACATGGACGTTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTTGTTAGCACGAAAAGGCTCTTTGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTTTTAGGTATAAAGAGATCCAGTAGACAGCAACCAGCGCTATCTTCATCGGTAATATCAAGCGACAGCATGCATATTGGCATTCTTGCCGCTGCAGCTCATGCTGCTTCGAATAATAGCCCATTTACTATATTTTATAATCCAAGGACCAGCCCCTGCGAATTTGTGATTCCATTGGCCAAGTATAATAAAGCACTGTACACTCATGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGATTCAGGAGTACGCAGATATATGGGCACAATCACTGGGATCAGTGACTTAGATCCTGTCAGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCTACAGCTGGCGAGCGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCTGTTGTGACTCCTTTCTACATTTGCCCGCCTCCGTTTTTTAGACCAAAATTCCCCAAGCAACCAGGAATGCCAGAAGACGATTCTGAAATAGAAAATGCTTTCAAGAGAGCTATGCCGTGGCTTGGAGATGAACTCGGCATGAAAGATGCCTCAAGTTCAATCTTCCCCGGTTTGAGTTTAGTCCAATGGATGAGCATGCAGCAGAATAATAATAATAATAATCAGTTTTCTGCTCCTCAATCAGGACTTATACCTCCATCCATGCTTTCATCAAACACAATGCATGCTAACATCAACACCGATGATCCATCCAAGATATTGAACTTTCAATCCCCTGCTGGTCCAAATCTTCAATTTAACAAACCTAATTTACCAAACCAAGTCAATCAATTGCAACAGTCCCCAAATGCGTGGTCTCAACAGCAACAACAGCAGCAGAAGATGCAGTCGATGTTGCAAACACCGTTAAACCAGCTGCAGCAACAACAGCAGCAGCAGCAGCAGAGGCAACATCAACTGGCTGGACCACAAAACCTGCCGCAGATGCAGCAACAACAGCCGCAACTAACTCAACCCAATGCACATCAGCCTCAACAACAGCAACAACAACAGCAGCAGCAACAACACCAACAGTCGACTCAAACCACGACTATGAATAATGGAACAGTTGGTTCTAACCAGATTCCAAATCAGTGTGTGCAGCAACCTGTAACATACTCTCAGCTTCAGCAACAGTTGCTCTCGGGAAATGTCCAAGCCCAGCAAAATTTCCAGTCAGTTGGCAAGAATGGATTGATAATGACATCCTTACCACAAGACTCGCAATTTCAGCAACAGATAGACCAACAACAACAAGCTAGTCTCGTACAGCGGCAGCAGCAGCAGCAACAACAACAACAGACTCAGTTGCAACAATCATCATTACAGTTATTGCAACAAAGCATGTTACAAAGGGCGCCACAGCAATCACAAATGACTCAAATTTCGCCACAAAACACCTCAGATCAACAACAACAGATGCAGTTGCTGCAAAAGTTGCAGCAGCAGCAACAACAGCAACCACTTTCAACGTCTTCCCCACTTTTGCAGTCTCAGCTTATGCAGCAACAAAACCAGCAATTGCCGCAGCAGCCTATGTCACAGCATCATCAGCCTCAACAGCTTGGTAACAATGCATTCTCAATGGAGAAGCTTCTCAACAATAATTACTCTTCTTCAGCTATCATGCATCCGCAGCAGCTTCCTGTGAACAATCACCAGAATACACAAAAATCACCGACAAATACTAGAGCTCCCTCCGCTTTTACAGACGGAGATGCCCCGTCATGCTCAACTTCGCCATCTACTAATAACTGTCAGACATCGCCTCCAAACCTCCTGAAAAGAAATCAAACAGATGCATTTGGAGGACCTTTGATAGTTGAGACAACCAATAATATGATGCAGGAGCTTCAAAGTAAGTCTGACAAACATGATTTACAAGGTCTAAAAGGACCCGACAAGCAAAAGTACAAAGGGGCGATCAATGATCAGATGGAAGCTTCTTCTGGAACATCTTACGGTATTGATCCTGCTAACATCCACCAGAACCTTCCACTTTCCAACTTCTACATGGATAGTGATGTCCACTCGCAACAACCAAGAAGTAACTTACCATTTGCCTCTAACCTTGATGGATTAACACCTGATCCTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGTTGTCTAATTATGGTGGTGCTCCGAGAGATATTGAAACTGAGCTGTCTACTGCTGATATTAGTTCACAGTCGTTTGGTGTGCCAAACATGTCTTTTAAGCCAGGATGCTCAAGTGATATTGCTATCCCTGATACTGGCGTTATGAATAATGGCTTGTGGTCTAATCAGAATCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCGGTCGGAAGATGTATTGATGTCACCCGTTACAAAGGATATGAAGAACTCCGGAATGATTTGGCTCGTATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGACTGGAAACTAGTATATGTGGATCACGAAAACGACATTCTTCTCGTCGGTGACGACCCTTGGGAAGAATTTGTAAACTGTGTCCAAAGCATAAAGATACTATCATCTGCTGAGGTACAACAGATGAGCTTGGAAGGGGACTTAGGTTATGTTCCTATCACCAATCAAGCTTGTAGTGGTTCAGAAAGTGGTAATGCATGGAGGGCACAGTACGATGATAACTCTGCAGCCTCGTTTAATCGATAA 3372 0.4365 MKAPSNGYLPNSGEGERKAINSELWHACAGPLVSIPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDDSEIENAFKRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQNNNNNNQFSAPQSGLIPPSMLSSNTMHANINTDDPSKILNFQSPAGPNLQFNKPNLPNQVNQLQQSPNAWSQQQQQQQKMQSMLQTPLNQLQQQQQQQQQRQHQLAGPQNLPQMQQQQPQLTQPNAHQPQQQQQQQQQQQHQQSTQTTTMNNGTVGSNQIPNQCVQQPVTYSQLQQQLLSGNVQAQQNFQSVGKNGLIMTSLPQDSQFQQQIDQQQQASLVQRQQQQQQQQQTQLQQSSLQLLQQSMLQRAPQQSQMTQISPQNTSDQQQQMQLLQKLQQQQQQQPLSTSSPLLQSQLMQQQNQQLPQQPMSQHHQPQQLGNNAFSMEKLLNNNYSSSAIMHPQQLPVNNHQNTQKSPTNTRAPSAFTDGDAPSCSTSPSTNNCQTSPPNLLKRNQTDAFGGPLIVETTNNMMQELQSKSDKHDLQGLKGPDKQKYKGAINDQMEASSGTSYGIDPANIHQNLPLSNFYMDSDVHSQQPRSNLPFASNLDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSSDIAIPDTGVMNNGLWSNQNQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLEGDLGYVPITNQACSGSESGNAWRAQYDDNSAASFNR 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02478 1123 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Trre4g02478 1123 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1085 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre4g02478 1123 FunFam Auxin response factor 124 228 - -
Trre4g02478 1123 Coils Coil 645 665 - -
Trre4g02478 1123 Gene3D - 123 227 IPR015300 -
Trre4g02478 1123 MobiDBLite consensus disorder prediction 677 742 - -
Trre4g02478 1123 FunFam Auxin response factor 289 361 - -
Trre4g02478 1123 Pfam AUX/IAA family 993 1082 IPR033389 -
Trre4g02478 1123 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Trre4g02478 1123 CDD B3_DNA 125 217 IPR003340 GO:0003677
Trre4g02478 1123 MobiDBLite consensus disorder prediction 427 585 - -
Trre4g02478 1123 SMART B3_2 126 228 IPR003340 GO:0003677
Trre4g02478 1123 Gene3D - 991 1085 - -
Trre4g02478 1123 FunFam Auxin response factor 991 1085 - -
Trre4g02478 1123 Gene3D - 289 360 - -
Trre4g02478 1123 MobiDBLite consensus disorder prediction 772 820 - -
Trre4g02478 1123 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre4g02478 1123 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Trre4g02478 1123 ProSiteProfiles PB1 domain profile. 996 1080 IPR000270 GO:0005515
Trre4g02478 1123 MobiDBLite consensus disorder prediction 772 818 - -
Trre4g02478 1123 SUPERFAMILY CAD & PB1 domains 1009 1074 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02478 Trre-Chr4 24871755 24877578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02478 1 490 B3 DNA Binding Superfamily AT1G19220 81.010 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre4g02478 AUX_IAA 4.6e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02478 K14486 - gmx:100804628 1572.76