Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02460 ATGGTGAAAACAAATGTGGAGAAACCTGCGACGGAACGAAGTGATGCTTCAATGTTCCGAGGAGTGAGGAAGAGGAAGTGGGGAAAATATGTGTCGGAAATTAGACTACCAAACAGCCGCCAGAGAATCTGGTTAGGTTCTTATGATTCTGCCGTTAAGGCGGCGCGTGCTTTTGACGCGGCTATGTTTTGCTTACGTGGCAGTGGTGCTAAATTTAATTTTCCCGGGGATCCGCCCAATATTGCCGGAGGAGAGTCCATGACACCTTCTCAGATTCAAGAAGCTGCAGCCAGTTTTGCTAATTCGGATATCCATAATGAGAAACCAGGTCGACCCGATAATGTGAAAATGGAATCTGAGTCGTCGGAGGAAGGGACTGTAATGTTGCCCATGGAATCACCGTCTCCGGCACTGTCAGATGCGACTGTTCAAACGGATTTTGATTTTAAGCAAAATATGTTGTTTTCGGATTCGGTTGGTGTAAATGGGTCGGGTTATAGTGGACCCAAGTACTCTGTTTTTCCGGGTTTTTATGATTTTGGTGGCGATTTCTATGTGCCGGAGTTGCCAAGTTATGATTATGGAGAAGAGATCATGGATGGGTTGATAATTCATGATTCTTTTTTGTGGAATTTCTAA 639 0.4476 MVKTNVEKPATERSDASMFRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAVKAARAFDAAMFCLRGSGAKFNFPGDPPNIAGGESMTPSQIQEAAASFANSDIHNEKPGRPDNVKMESESSEEGTVMLPMESPSPALSDATVQTDFDFKQNMLFSDSVGVNGSGYSGPKYSVFPGFYDFGGDFYVPELPSYDYGEEIMDGLIIHDSFLWNF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02460 212 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Trre4g02460 212 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Trre4g02460 212 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Trre4g02460 212 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Trre4g02460 212 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Trre4g02460 212 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Trre4g02460 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 124 - -
Trre4g02460 212 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Trre4g02460 212 MobiDBLite consensus disorder prediction 102 128 - -
Trre4g02460 212 Pfam AP2 domain 19 67 IPR001471 GO:0003700|GO:0006355
Trre4g02460 212 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Trre4g02460 212 MobiDBLite consensus disorder prediction 106 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02460 Trre-Chr4 24287193 24287831 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02460 1 212 AP2-EREBP Transcription Factor Family AT1G74930 46.977 1.05e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre4g02460 AP2 1.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02460 - - mtr:11441685 269.626