Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02455 ATGGTGAAATCAAACGTGGAAAAAACTGCGGCGGAAATAAGCGATTCTTCATTATACAGAGGAGTAAGGAAAAGGAAGTGGGGAAAATATGTTTCTGAAATTAGATTACCAAACAGCCGCCAAAGAATATGGTTAGGTTCATTCGACACTGCCAAAAAAGCCGCGCGTGCATTTGACGCGGCTACTTTCTGCTTACGTGGCAGTGGTGCTAAGTTTAATTTCCCTAATAACCCGCCGGATATTCCCGGAGCAAGGTCCATGACCCATTCTGAAATTCAAGCTGCTGCAACCCGTTTTGCAAATTCGGAGCCCCGTGAGGAGAATTCGGGTCGACCCGATAATACAATTGTCGAAACACTGTCTTCGTCGGAGGTGACTGCATTGTTGCCTATGGAGTTTCCGTCTCCTGCTCTCTCCGATACGACGGTTCAGACGGAGAGTGACGTTACAGATAATGGGTTGTTTAGGGACCTGTTTTCAGAAACCGGGTCGGGTTATTCCATGTTTCCGGGTTTTGATAATTTTAGTGGCGATTTCTATATTCCAGAGATGACAAATTTTGATTATGAAGAAGAGAACATGGATGGGGTGATAATTATTGATTCCTTCTTATGGGATTTTTAA 624 0.4407 MVKSNVEKTAAEISDSSLYRGVRKRKWGKYVSEIRLPNSRQRIWLGSFDTAKKAARAFDAATFCLRGSGAKFNFPNNPPDIPGARSMTHSEIQAAATRFANSEPREENSGRPDNTIVETLSSSEVTALLPMEFPSPALSDTTVQTESDVTDNGLFRDLFSETGSGYSMFPGFDNFSGDFYIPEMTNFDYEEENMDGVIIIDSFLWDF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02455 207 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Trre4g02455 207 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Trre4g02455 207 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Trre4g02455 207 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Trre4g02455 207 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Trre4g02455 207 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Trre4g02455 207 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Trre4g02455 207 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Trre4g02455 207 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Trre4g02455 207 PIRSF PTI6 117 196 IPR017392 GO:0003700
Trre4g02455 207 PIRSF PTI6 3 133 IPR017392 GO:0003700
Trre4g02455 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02455 Trre-Chr4 24223575 24224198 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02455 17 207 AP2-EREBP Transcription Factor Family AT1G19210 45.854 1.49e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre4g02455 AP2 2.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02455 - - mtr:11441685 300.056