Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02452 ATGGTAAAATCAAACGTGGAAAAAACTACGGCGGAAAGAAGTGATTCTTCATTATATAGAGGAGTAAGGAAGAGGAAGTGGGGAAAATATGTTTCTGAAATTAGATTACCAAACAGCCGCCAAAGAATATGGTTGGGTTCATTCGACACTGCCGAAAAAGCCGCGCGTGCATTTGACGCGGCTACTTTCTGCTTACGTGGCAGTGGTGCTAAGTTTAATTTTCCTAGTAATCCACCGGATATTCCCGGAGCAAGGTCCATGACCCATTCTGAAATTCAAGCTGCTGCAACCCGTTTTGCAAATTCGGAGCCCCACCAGAAGTGTTTGGGTCGACCAGACAATACTCCGACAGAAACACCATCTTCGTCGCAACGGTTCAGACAGATTGCGACTCCAAGCAAAACGGGTTATTTTCGGATATGTTTTTAG 429 0.4499 MVKSNVEKTTAERSDSSLYRGVRKRKWGKYVSEIRLPNSRQRIWLGSFDTAEKAARAFDAATFCLRGSGAKFNFPSNPPDIPGARSMTHSEIQAAATRFANSEPHQKCLGRPDNTPTETPSSSQRFRQIATPSKTGYFRICF 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02452 142 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Trre4g02452 142 MobiDBLite consensus disorder prediction 102 125 - -
Trre4g02452 142 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Trre4g02452 142 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Trre4g02452 142 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Trre4g02452 142 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Trre4g02452 142 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Trre4g02452 142 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Trre4g02452 142 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Trre4g02452 142 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Trre4g02452 142 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02452 Trre-Chr4 24209331 24209759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02452 17 124 AP2-EREBP Transcription Factor Family AT1G19210 63.889 2.46e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre4g02452 AP2 3.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02452 - - mtr:11441685 191.045