Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02451 ATGGTAAAATCAAACGTGGAAAAAACTACGGCGGAAAGAAGTGATTCTTCATTATATAGAGGAGTAAGGAAGAGGAAGTGGGGAAAATATGTTTCTGAAATTAGATTACCAAACAGCCGCCAAAGAATATGGTTGGGTTCATTCGACACTGCCGAAAAAGCCGCGCGTGCATTTGACGCGGCTACTTTCTGCTTACGTGGCAGTGGTGCTAAGTTTAATTTTCCTAGTAATCCACCGGATATTCCCGGAGCAAGGTCCATGACCCATTCTGAAATTCAAGCTGCTGCAACCCGTTTTGCAAATTCGGAGCCCCACCAGAAGTGTTTGGGTCGACCAGACAATACTCCGACAGAAACACCATCTTCGTCGCAACGGTTCAGACAGATTGCGACTCCAAGCAAAACGGAAGAGAACATGGATGGAGTGATAATTATTGATTCCTTCTTATGGAATTTTTAA 459 0.4401 MVKSNVEKTTAERSDSSLYRGVRKRKWGKYVSEIRLPNSRQRIWLGSFDTAEKAARAFDAATFCLRGSGAKFNFPSNPPDIPGARSMTHSEIQAAATRFANSEPHQKCLGRPDNTPTETPSSSQRFRQIATPSKTEENMDGVIIIDSFLWNF 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02451 152 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Trre4g02451 152 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Trre4g02451 152 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Trre4g02451 152 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Trre4g02451 152 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Trre4g02451 152 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 123 - -
Trre4g02451 152 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Trre4g02451 152 MobiDBLite consensus disorder prediction 100 126 - -
Trre4g02451 152 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Trre4g02451 152 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Trre4g02451 152 MobiDBLite consensus disorder prediction 112 126 - -
Trre4g02451 152 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02451 Trre-Chr4 24209188 24209759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02451 17 123 AP2-EREBP Transcription Factor Family AT1G19210 64.486 4.54e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre4g02451 AP2 4.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02451 - - mtr:11441685 191.815