Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02443 ATGTGGCCGTGGAATAGAACTCCTTGTGCAGCGTGCAAGAATCAGCGAAGAAAATGCATGAAAGAATGCATTTTTGCACCATATTTTCCGCCAGATAATCCTAAAAAATTTGCTTATGTACGAAAAGTTTTTGGTGTTAGTAACGTTTCAAAACTACTCAATAATGTGAATATTGCACAGCGTTCAGATGCCGTTAAGTCATTGACTTATGAAGCAGAAGCACGTTTGGGGGATCCTGTTTATGGTTGTGTTGGTATTATTTCACAACTTCAGAATCAAGTTCGAAACTTGGAAAATGAACTTGTTATGGCGAAGAAACAACTCGCTTCTTTTCATGCTATAGGTCCTCTACCTCTGACTACGGCGATCGAAAGTTCTTCTTTTTCCTTCACTTCTTCTGCTCAACAGAAACATGAAATTTTCAACTTCAACGATAATATCTCATTTTCTAGCTTTCAAACCTATAACCATTTTTTCTCGAAGATGGTGAAGGAAGAAAAAGATAATTTTGATTAG 516 0.3682 MWPWNRTPCAACKNQRRKCMKECIFAPYFPPDNPKKFAYVRKVFGVSNVSKLLNNVNIAQRSDAVKSLTYEAEARLGDPVYGCVGIISQLQNQVRNLENELVMAKKQLASFHAIGPLPLTTAIESSSFSFTSSAQQKHEIFNFNDNISFSSFQTYNHFFSKMVKEEKDNFD 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02443 171 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Trre4g02443 171 Coils Coil 87 114 - -
Trre4g02443 171 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Trre4g02443 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02443 Trre-Chr4 24140274 24140789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02443 7 136 AS2 family AT5G66870 55.385 3.23e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre4g02443 LOB 1.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02443 - - mtr:25489402 182.185