Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02441 ATGTCTAGCTCATCGGAATTCTCAGAGGTTTCCGGCAACAAACCGGCGAGGTCACCGGAAAAGTTGACAACTTTCTCTCAAACTTGTAATTTGTTGAGTCAATATATTAAGGAAAAGGGTTGCTTCAAAGATCTTTCTCTTGGTATCACATGCAACAACACCGGCCCAACTGGGTCTTCTGAAACTTCTTCTCAATCTGCAACAACCATGAATTTGTTTCCTACCATGGAAAACAACTTGACACCAAAGAACCTTACAACTATGGATTTGCTCACTCCACAAGCTACTTTGAACAATTCCAATGCTATTAAGGGGCCTAAAGCTGCACAATTGACAATGTTTTATAACGGTCAAGTGATTGTAATCGACGATTTTCCTGCTGATAAAGCCCAAGAACTTATGGCTTTTGCTAACAAAGGAATTTCACAAAGTCAGAACAATTCTGTGTACACTTACACACAAAGCCAGCCTTCATTTCCTCCTAATTTGGTCCGACCTTCGGTTGATTCAACCGCTCCAGTTACTACTATGAACATCATCCCTAGTACTTCCACTGGTGCTGGCCCTCAAGTGCTTTCCAGACCTAATGTTTGCGATCTTCCAATTATGAGGAAAGCTTCTCTTCATCGGTTTCTTGAGAAGAGAAAGGATAGAGTTGCTGCCAAAGCACCATATCAAGTTAATAAACCAGCTGAGTCCATGTCATGGCTTATGGGTGCCAAATAA 726 0.416 MSSSSEFSEVSGNKPARSPEKLTTFSQTCNLLSQYIKEKGCFKDLSLGITCNNTGPTGSSETSSQSATTMNLFPTMENNLTPKNLTTMDLLTPQATLNNSNAIKGPKAAQLTMFYNGQVIVIDDFPADKAQELMAFANKGISQSQNNSVYTYTQSQPSFPPNLVRPSVDSTAPVTTMNIIPSTSTGAGPQVLSRPNVCDLPIMRKASLHRFLEKRKDRVAAKAPYQVNKPAESMSWLMGAK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02441 241 ProSiteProfiles Tify domain profile. 104 139 IPR010399 -
Trre4g02441 241 Pfam tify domain 106 138 IPR010399 -
Trre4g02441 241 MobiDBLite consensus disorder prediction 1 20 - -
Trre4g02441 241 Pfam Jas motif 201 226 IPR018467 -
Trre4g02441 241 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 232 IPR040390 -
Trre4g02441 241 SMART tify_2 104 139 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02441 Trre-Chr4 23985358 23987762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02441 1 237 Tify Gene Family AT1G19180 38.060 4.62e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre4g02441 tify 9.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02441 K13464 - gmx:100801449 298.516