Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02434 ATGGCATTAGCCATTTCATCTACTTCATTATCAAGTTTTCCAAACAGAGAAATATGTCAAAAGGTATTTCACCAAGGAAAAACACCAAACTTATGGTTAAGCAGCAGCAACAACAGAAGAAGAAAACTTACAATTAGAAATGCAAAAAAAGGAGTGTCAGATGTGTGTGTACCACTCCCTCCTGATAGGCCATTGTGGTTTCCTGGTAGTTCACCTCCTGAATGGCTAGATGGCAGTCTTCCTGGTGATTTTGGTTTTGACCCTCTTGGATTAGGTTCTGATCCAGAGTTACTAAAATGGTTTGCACAAGCAGAACTAATGCATTCAAGATGGGCAATGTTAGGAGTAACAGGAATCCTCATCCCAGAAATACTCGACAATATGGGTTACGTAAAAAACTTCTCATGGTTCAATGCAGGTTCAGTCCAATATTTCGCAGACCCAACAACACTATTCATTGTTCAACTCGCTTTGATGGGTTGGGCCGAGGGTCGAAGATGGGCCGATATTGTTAATCCAGGTAGCGTTGATATTGAGCCGAAGTTGCCAAATAGGCCGAACCCAAAACCAGATGTTGGTTACCCTGGTGGGCTTTGGTTTGATCCTATGCAGTGGGGAAGAGGTTCACCTGAGCCTGTTATGGTTTTGAGGACTAAGGAGATTAAGAATGGAAGACTTGCTATGCTTGCTTTTCTTGGATTTTGTTTTCAAGCTGTTTATACTGGTGGTAGTCCTCTTGATAATTTGATGGCTCATCTTGCTGATCCCGGTCATGTCAACATTTTCTCGTTGGGTTGTGCGAGTGTTATGTATGACGGAAAGCAAAAAATCCGCCATATAGTGCCCGCCATATCTGCCTTAAAACACCATGGCACCACAATCTGCCATGGCCGACATATGACAACACTTGTGACAAGTCTATTTCTATCTGTTATGTTTTGGTTTGCAATCGCGGTTACTGTTACGCTGCAGATCTTTATATTGAGGGAAATTGTGGTCCATCATATATGA 1011 0.4224 MALAISSTSLSSFPNREICQKVFHQGKTPNLWLSSSNNRRRKLTIRNAKKGVSDVCVPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLGVTGILIPEILDNMGYVKNFSWFNAGSVQYFADPTTLFIVQLALMGWAEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYTGGSPLDNLMAHLADPGHVNIFSLGCASVMYDGKQKIRHIVPAISALKHHGTTICHGRHMTTLVTSLFLSVMFWFAIAVTVTLQIFILREIVVHHI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02434 336 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
Trre4g02434 336 FunFam Chlorophyll a-b binding protein, chloroplastic 73 258 - -
Trre4g02434 336 SUPERFAMILY Chlorophyll a-b binding protein 62 266 - -
Trre4g02434 336 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 24 264 IPR001344 GO:0009765|GO:0016020
Trre4g02434 336 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02434 Trre-Chr4 23793829 23795822 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02434 56 263 Chloroplast and Mitochondria Gene Families AT3G61470 65.865 8.29e-100 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02434 K08908 - gmx:100800374 431.409