Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02422 ATGGCCGCTGCTGCTGTTCTCCTCCTCATCTCTCTCTCCTTTCTTTCTCTCTCCACCGCGGCGCTACCACCGTCAGAGACACAATCTCTCCTTAAACTAAAACAATCCTTAACAAATTCTGATAAAATATTATCATCATGGATCCCCAACATCTCCCCGTGTTCGGGCACATGGATCGGTGTTGTCTGCTTCAATAATATCATCAGCGGCCTTCATCTCTCCGACCTCAGCCTCTCCGGAACAATAGATGTCGATGCTATTGCCGAGATTCGCGGCTTAAGGACACTTAGTTTTGTTAACAACTCCTTCTCTGGTCCTATTCCTCAGTTCAACAAACTTGGCACCATCAAATCTCTTCTTCTTCAACAAAATCAATTCACCGGTCCAATTCCGCAAGATTTCTTCGCGCAGTTAACTTCTTTGAAAAAAGTATGGCTCTCTGGTAACAAATTCTCCGGCAATATTCCGGTTTCTTTAACGGAACTCGATCTCCTCAAAGAACTGCACCTCGAAGGTAACCAATTCTCCGGTAAATTACCGGATCTAAAACAAGATATCAAATCATTTGATGTTTCGAATAACCAACTAGAAGGTCCTATCCCTGAAAATCTCGTGAAATTCGGTCCTGTTTCGTTTGCCGGAAATGCAGGTCTGTGTGGAAAACCGTTGGAAAAGCAATGTGACGGTTCATCTTCTTCTTCTTCTTCGTTTTTGGATAGTGTTGTTACCGATGCTCCAACGGAAAACGGTGACGGGTCTGGTTGGGCGTCTAAAGTGATGGTAATTCTGTTATTGGCAGTTGTAGCGGCGGTTATACTTTTGTTTTTGAAATCGAGGCAGAGAAGACGAGACGATGATTTTAGCGTCGTGAGCCGAGACTCTAGCGTTGACGAGGTAATGCAGGTGCATGTACCGATAAGTAGAGCTTCTTCCGCGTCTGAGAGAGTTGGGAGACGGAACGTGGGGGAATCTTCGAAGAGAAGCGGAATGGGGGGTGGAAATAGAAATGGGATAGGTGATTTAGTGATGGTGAATGATGAGAAGGGTTCGTTTGGTTTGCAGGATTTGATGAAAGCTGCTGCTGAGGTATTGGGGAATGGCGGATTGGGTTCGGCTTATAAAGCCGCTATGGCGACCGGGTTGAGTGTGGTTGTGAAGAGGATGAGGGAAATGAATAAAATTGGGAAAGATGTGTTTGATGCTGAAATGAGACAATTTGGGAGGATTAGACATCCTAATATTTTGACTCCTTTAGCTTATCATTATAGAAGAGAGGAAAAGCTTTTCGTTACCGAGTATATGCCGAAAGGAAGCTTGTTATATGTCTTGCACGGTGACAGAGGAACATCTCATGGAGATTTAACATGGCCTATCCGTTTAAAGATTGCTAAAGGAATTGCAAGAGGGTTAAGCTTCCTTTACACTGAATTTTCAACCTATGATTTACCTCATGGAAACCTTAAATCAAGCAATGTTCTACTAACAAATGAATATGAGGCACTTTTAAGTGATTATGCTTTTCAACCACTAATCAATCCTAGCATTGCAGTACAATCAATGTTTGCATACAAAACACCAGATTACATTCAAAACCAGAAGCTTTCGCAGAAAGCCGATGTTTATTGCCTTGGAATCATCATTCTCGAAATCATTACAGGGAAATTCCCTTCTCAATATCATAGTAATGGCAAAGGTGGGACTGATGTTGTTCAATGGGTCCTCACTGCAATTTCGGAGAGACGAGAAGCTGAATTGATTGATCCTGAGTTGCTAGATAATGCATCAAATTCGGTCAATAATATGCTGCAGCTTCTCTTAATTGGTGCTGCTTGTACCGAAAACAACCCGGAACAAAGAGTGCATATGAAGGAATCTATTAGAAGGATAGAGGAGGTACAACTCTAA 1905 0.4268 MAAAAVLLLISLSFLSLSTAALPPSETQSLLKLKQSLTNSDKILSSWIPNISPCSGTWIGVVCFNNIISGLHLSDLSLSGTIDVDAIAEIRGLRTLSFVNNSFSGPIPQFNKLGTIKSLLLQQNQFTGPIPQDFFAQLTSLKKVWLSGNKFSGNIPVSLTELDLLKELHLEGNQFSGKLPDLKQDIKSFDVSNNQLEGPIPENLVKFGPVSFAGNAGLCGKPLEKQCDGSSSSSSSFLDSVVTDAPTENGDGSGWASKVMVILLLAVVAAVILLFLKSRQRRRDDDFSVVSRDSSVDEVMQVHVPISRASSASERVGRRNVGESSKRSGMGGGNRNGIGDLVMVNDEKGSFGLQDLMKAAAEVLGNGGLGSAYKAAMATGLSVVVKRMREMNKIGKDVFDAEMRQFGRIRHPNILTPLAYHYRREEKLFVTEYMPKGSLLYVLHGDRGTSHGDLTWPIRLKIAKGIARGLSFLYTEFSTYDLPHGNLKSSNVLLTNEYEALLSDYAFQPLINPSIAVQSMFAYKTPDYIQNQKLSQKADVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVLTAISERREAELIDPELLDNASNSVNNMLQLLLIGAACTENNPEQRVHMKESIRRIEEVQL 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02422 634 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Trre4g02422 634 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Trre4g02422 634 Gene3D Phosphorylase Kinase; domain 1 334 433 - -
Trre4g02422 634 Gene3D Ribonuclease Inhibitor 135 229 IPR032675 -
Trre4g02422 634 MobiDBLite consensus disorder prediction 310 335 - -
Trre4g02422 634 SUPERFAMILY Protein kinase-like (PK-like) 362 627 IPR011009 -
Trre4g02422 634 ProSiteProfiles Protein kinase domain profile. 358 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02422 634 SUPERFAMILY L domain-like 24 207 - -
Trre4g02422 634 Gene3D Transferase(Phosphotransferase) domain 1 434 634 - -
Trre4g02422 634 Gene3D Ribonuclease Inhibitor 25 134 IPR032675 -
Trre4g02422 634 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 633 IPR046959 -
Trre4g02422 634 Pfam Protein kinase domain 362 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02422 Trre-Chr4 23704464 23706874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02422 1 634 Receptor kinase-like Gene Family AT3G42880 47.866 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre4g02422 Pkinase 2.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02422 - - gmx:100790660 820.846