Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02419 ATGGATCAAGATTGGGATATATCTGCAGTAGTCAGACCCTACATCACCTCTTCCTCCACCACCTCCACAATAGCCACCACCTCATCAACACCTTCTTCCTCTCGTTTTGAAACTACTTCTACATCTTCCAACTTCTTCTCTCTTTACCCTGCACAACAATCCGGTCACATTGGGCATGGAGGACCACAGCAACCTCTCACAATGCTGAATTTTAATACCAAACCTTTCTACCTCCAACCACAACCTCTTTCTTCTAACTCATTCTCTTTTTCATCACCATCACCAAAACCACTTTACATACAACAACCAAACCAACATCATCTTAATAACAACTCTCACAATGTTGTCTTTGCTGCAACCTCAAAATCTAAAAGAAGGAAGATTCAGCCTGAGAAGATATGTGAAGTGCAATCTCATAATCTCTCATCAGATTTATGGAGATGGAAGAAATATGGTCAAAAATCTATCAAAGGGTCACCATATCCAAGGGGATATTTTAGATGTAGCAGTTCAAGGGAGTGTTTAGCCAAAAAACAAGTTGAGCAGAAAAAATCAGATCCAACAATATTCACAGTAACATATTTTGGTGAACATAATCACTCTGCTCCGACTCAAAGAAATTTTCTTACTGGTTCAACAAGGCAGAAGCCCCAAGTTTCTCCATCTACTTTAAGAGCTGAAGAGGAAAATGCTACCCCCTTTGTAATAGATAATTTCTATAAAGATTTAGATAAATTAATAGATTTAGATGAATTGTAA 759 0.3808 MDQDWDISAVVRPYITSSSTTSTIATTSSTPSSSRFETTSTSSNFFSLYPAQQSGHIGHGGPQQPLTMLNFNTKPFYLQPQPLSSNSFSFSSPSPKPLYIQQPNQHHLNNNSHNVVFAATSKSKRRKIQPEKICEVQSHNLSSDLWRWKKYGQKSIKGSPYPRGYFRCSSSRECLAKKQVEQKKSDPTIFTVTYFGEHNHSAPTQRNFLTGSTRQKPQVSPSTLRAEEENATPFVIDNFYKDLDKLIDLDEL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02419 252 ProSiteProfiles WRKY domain profile. 137 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g02419 252 Gene3D WRKY domain 130 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g02419 252 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 227 IPR044810 GO:0003700
Trre4g02419 252 Pfam WRKY DNA -binding domain 144 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g02419 252 MobiDBLite consensus disorder prediction 202 226 - -
Trre4g02419 252 SUPERFAMILY WRKY DNA-binding domain 137 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g02419 252 SMART WRKY_cls 142 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02419 Trre-Chr4 23672120 23673572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02419 1 217 WRKY Transcription Factor Family AT4G01250 43.439 2.49e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre4g02419 WRKY 2.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02419 K13425 - gmx:100815829 184.882