Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02408 ATGGCATCTGATTCAAACGCCACCAACACGCTTCAGGCAATTCGCTACAACCGCGGTTCTCTTCAGCTTCTCGACCAGAGAAAGCTTCCTCTAGAAAGCGTTTACTTGGAAATTCGGGATTCAAATGATGGCTGGAATGCTATACAAGATATGGTGGTCCGGGGAGCCCCTGCTATTGCTATTGCAGCAGCACTCTCTCTGGCTGTTGAGGTTTCCAATTTAGAAGATTTCAATGGGTCAACCGATGATGCTGTTTACTTCCTACAGAAGAAGTTGGAATATCTTGTCTCGAGTCGGCCAACTGCGGTGAACTTATCAGATGCCGCGACAAAACTCAAAGAAATAATTTCTAAAGTTGCTGCTACCACTTCAGAGGCTAAAGGTGTGTTTCAGGCTTATCTAGAGGCTGCTGAAATAATGCTTGAGGATGATGTTGCATCGAACAGAGCAATTGGAACTTATGGAGCTAGTGTTATTCAAAACCAAACAGAAAAACAGAAGCTCTCTGTTTTGACCCATTGCAACACCGGAAGTTTAGCCACAGCTGGATATGGTACCGCTCTTGGTGTGATCCGTGCACTTCATAGCGGGGGAGTTTTACAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAGGATCCAGACTTACTGCGTATGAGTTGGTACATGACAAAATACCTGCAACTCTTATAGCAGATTCTGCTGCAGCTGCATTAATGCAAGCTGGACGTGTGGATGCTGTTGTTGTTGGCGCAGATCGTGTAGCCTCAAATGGTGACACAGCCAATAAAATTGGAACCTATAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCTTTTTATGTGGCTGCACCCTTGACTTCAATCGATCTATCACTTTCTTCTGGACAACAAATTGTCATTGAGGAGAGATCTCCCAAGGAATTGTTGAATACACGTGGAGGACTTGGAGAACAGGTTGCTGCCTCAGGAATATCTGTGTGGAATCCGGCTTTTGATGTTACACCTGCAAATCTAATATCTGGGATCATCACTGAAAAGGGTGTTATTACAAAGACATCTGCTGGTGATGCTTTCGACATAAAAGCTTTTGTACAAAAAACAAGTTAA 1116 0.4373 MASDSNATNTLQAIRYNRGSLQLLDQRKLPLESVYLEIRDSNDGWNAIQDMVVRGAPAIAIAAALSLAVEVSNLEDFNGSTDDAVYFLQKKLEYLVSSRPTAVNLSDAATKLKEIISKVAATTSEAKGVFQAYLEAAEIMLEDDVASNRAIGTYGASVIQNQTEKQKLSVLTHCNTGSLATAGYGTALGVIRALHSGGVLQRAYCTETRPFNQGSRLTAYELVHDKIPATLIADSAAAALMQAGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGQQIVIEERSPKELLNTRGGLGEQVAASGISVWNPAFDVTPANLISGIITEKGVITKTSAGDAFDIKAFVQKTS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02408 371 Gene3D - 201 366 IPR042529 -
Trre4g02408 371 Gene3D - 9 200 IPR027363 -
Trre4g02408 371 SUPERFAMILY NagB/RpiA/CoA transferase-like 8 356 IPR037171 -
Trre4g02408 371 FunFam Methylthioribose-1-phosphate isomerase 9 200 - -
Trre4g02408 371 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 7 369 - -
Trre4g02408 371 FunFam Methylthioribose-1-phosphate isomerase 166 364 - -
Trre4g02408 371 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 12 354 IPR005251 -
Trre4g02408 371 Pfam Initiation factor 2 subunit family 53 353 IPR000649 GO:0044237
Trre4g02408 371 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 39 354 IPR011559 GO:0044249
Trre4g02408 371 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 11 363 IPR005251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02408 Trre-Chr4 23463929 23471900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02408 49 371 Eukaryotic Initiation Factors Gene Family AT2G05830 75.617 2.04e-172 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02408 K08963 - gmx:100799311 589.726