Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02366 ATGAAAGAATGCAATCATCAAAATGAGGCCCAACGACGACAATTGACTGAGGAGCTTGGGCTTGAGCCCAAAGAAGTGAAATTTTGGTTCAAGAATAAGAGAACTTTGCTTAAGAATCATTTCAAGAAAAAATACAACAATAATCTCCGTTTGGAGAATGAAAGGCTTCGGAATGAGAACCTACTAATGAAAGAGGCATTAAAGGTCATAAAATGTGAAACTTGTGGGGGTCTCCCATTTTCAGTGAATGAGCATGAACATTTCAAGCACAAAATGCAACGACAAAATGCTGAGATTAAACAAAAGGTAGTGAACTCATTTATATGA 327 0.367 MKECNHQNEAQRRQLTEELGLEPKEVKFWFKNKRTLLKNHFKKKYNNNLRLENERLRNENLLMKEALKVIKCETCGGLPFSVNEHEHFKHKMQRQNAEIKQKVVNSFI 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02366 108 Gene3D - 2 43 - -
Trre4g02366 108 SUPERFAMILY Homeodomain-like 3 48 IPR009057 -
Trre4g02366 108 Coils Coil 46 73 - -
Trre4g02366 108 Pfam Homeodomain 4 38 IPR001356 GO:0003677
Trre4g02366 108 CDD homeodomain 2 40 IPR001356 GO:0003677
Trre4g02366 108 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 2 102 IPR042160 -
Trre4g02366 108 ProSiteProfiles 'Homeobox' domain profile. 1 40 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02366 Trre-Chr4 22716019 22716742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02366 2 103 Homeobox Transcription Factor Family AT1G05230 47.059 9.07e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre4g02366 Homeodomain 4.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02366 K09338 - gmx:100795075 108.612