Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02353 ATGTTGGAAGACAGCGCCAAGTTCCCAATAGATCTCAATAAGAATAATAACAACTTTTATGATTTCTCCAAAGGCTTTTACCACAAATGTTGGAAGGCGGTTGCAATGTCAATTGATAATAGTAGTGTTGGGTCCAATGATTCTCATACCTTCATGTTGGATCACCAAGGGTTGAAGAGAGGTGCCAATGATAACTATTCAGTTGCGCACAGTGCCAATCGTCGAGGAAGAGTCACACATGCATTGAGTGATGATGCTTTAGTTCAAGCTCTGATGGACAGTAATTCTCTGACTAAAGGGCTTGAAAATTTTGAAAAGTGGACAATTGATTTGAGGAAACTATATATGGGTGAGGCTGTTGCTCAAGGAGCTTTCGGGAAAGTCTACAAAGGTACTTACAATGGGGAGGATGTCGCTATCAAAATCATGGAGAGGCCTGAAAATGACATATCAATGGCTCAGTTGATGGAACAACAGTTTCAACGGGAGGTCATGATGTTGGCTACGCTGAAGCATCCTAACATAGTTCGTTTCATAGGTGCATGCCGTAAGCCTATGGTGTGGTGCATTGTTACTGAGTATGCTAAGGGTGGATCAGTTCGACAATTATTAACAAATCGCCAAAATAGAAAAGTTCCCCTCAAACTAGCTATCAAACAAGCTTTGGATGTTGCAAGAGGCATGGCATATGTTCATGGTCTTGGATTTATCCACAGGGACTTGAAATCTGACAACATGTTGATTTTTGGTGACAAGTCGATCAAAATTGCTGACTTTGGAGTTGCTCGGATCGATGTGCAAACTGAAGGAATGACTCCCGAGACTGGAACATACCGTTGGATGGCTCCGGAGATGATCCAACATAGGGCTTACACACTGAAAGTGGATGTATATAGCTTTGGGATTGTTTTGTGGGAGCTGGTCACTGGTATGCTTCCATTTCAGAATATGACAGCAGTACAGGCAGCACTTGCAGTTGTCAACGAAAATGTTCGCCCGATCTTGCCCAATGATTGTTTGCCTATTCTCCGCGAGATTATGACAAGGTGTTGGGATTCTAACCCTGATGACAGGCCACACTTCACTGAAATCGTTGCAATGCTTGAAAATGCCGAGATTGAGGTCATGACAACAGTTCGAAAGGCGAGGTTCAGGTGTTGCATGACCCAACCAATGACTTCGTAG 1185 0.4321 MLEDSAKFPIDLNKNNNNFYDFSKGFYHKCWKAVAMSIDNSSVGSNDSHTFMLDHQGLKRGANDNYSVAHSANRRGRVTHALSDDALVQALMDSNSLTKGLENFEKWTIDLRKLYMGEAVAQGAFGKVYKGTYNGEDVAIKIMERPENDISMAQLMEQQFQREVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQLLTNRQNRKVPLKLAIKQALDVARGMAYVHGLGFIHRDLKSDNMLIFGDKSIKIADFGVARIDVQTEGMTPETGTYRWMAPEMIQHRAYTLKVDVYSFGIVLWELVTGMLPFQNMTAVQAALAVVNENVRPILPNDCLPILREIMTRCWDSNPDDRPHFTEIVAMLENAEIEVMTTVRKARFRCCMTQPMTS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02353 394 FunFam serine/threonine-protein kinase HT1 197 390 - -
Trre4g02353 394 FunFam Serine/threonine-protein kinase isoform 1 103 196 - -
Trre4g02353 394 PRINTS Tyrosine kinase catalytic domain signature 230 248 IPR001245 GO:0004672|GO:0006468
Trre4g02353 394 PRINTS Tyrosine kinase catalytic domain signature 339 361 IPR001245 GO:0004672|GO:0006468
Trre4g02353 394 PRINTS Tyrosine kinase catalytic domain signature 276 286 IPR001245 GO:0004672|GO:0006468
Trre4g02353 394 PRINTS Tyrosine kinase catalytic domain signature 192 205 IPR001245 GO:0004672|GO:0006468
Trre4g02353 394 PRINTS Tyrosine kinase catalytic domain signature 295 317 IPR001245 GO:0004672|GO:0006468
Trre4g02353 394 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 77 370 - -
Trre4g02353 394 SMART serkin_6 114 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02353 394 ProSiteProfiles Protein kinase domain profile. 114 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02353 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Trre4g02353 394 CDD STKc_MAP3K-like 120 368 - -
Trre4g02353 394 Gene3D Phosphorylase Kinase; domain 1 103 196 - -
Trre4g02353 394 Pfam Protein tyrosine and serine/threonine kinase 116 368 IPR001245 GO:0004672|GO:0006468
Trre4g02353 394 Gene3D Transferase(Phosphotransferase) domain 1 197 390 - -
Trre4g02353 394 SUPERFAMILY Protein kinase-like (PK-like) 98 368 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02353 Trre-Chr4 22443346 22444530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02353 33 393 MAP Kinase Kinase Kinase AT2G24360 76.731 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre4g02353 PK_Tyr_Ser-Thr 1.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02353 - - gmx:100788536 682.945