Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02347 ATGAATATGAACAAGAACAAGTTCCCTTTTACTCCATCACAATGGCAAGAACTTGAACATCAAGCTCTTATCTACAAGTACATGGCTTCTGGTATCTCTATTCCACCTGATCTTCTTTTCACTATCAGAAAAAGCTATTTGGACAGTCCTCTCTCTTCAAGACTTTTGCTTAATCAGCCACAACAACACTATGGATGGAACTATCTGCAAATGGGTTTAGGAAGAAAAATAGATCCTGAACCAGGTAGATGCAGAAGAACAGATGGAAAAAAATGGAGATGTTCAAAAGAAGCATATCCAGATTCTAAATACTGTGAAAGACATATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAATTTCAAAAACAACACCAACAAATAATAATAATAATAATAATGCTTCAACATTTGGAATCTCATCAATTACCAAAAATACCCCTGTATCAATAACTAATTCTTCTTTGTCCTTTGATACACAAAATCATCACCAAAACTACCCTCAAAATTCCTTTATGTATCCTCATACAACATCAAGGTCATTGTCCTTTGAAGACAATAGTGCTCCCTTGTTTCTTGACACTAATTCTTCCTCTCAGAATAATACAGATTACAGGAACAGGTATGTGTATGGACAGAAAGAAGAGGTAGATAAGTATGCATTCTTCAAAGAACCTTCTGGTAGCACTACTATGAAAAGCTTCTCTGCATCATCAATGGAACATGATCCTTGGCAACTAACACCACTCACTATGAGTTCTTCCTCGTCTTCGTCATCTTTGAGACAGAGGAGCTTTTCATCTTTGTCGAATGATTACTCTTCCTTTTTGCAACTTCAGAGTCTAAATGAACACTCAAAACAGCAAGAGCAAGATGAACCTCGAAAAACCGTTCATCGCTTCTTTGACGAATGGCCACACAAGGAGAGAGATCAATGGCTTGATTTGGATGATAAATCATCCACTACTCAACTCTCAATTTCTATTCCATCTTCAGCTCATGATTATCCAACTTTCACCTCAAGAAATCACCATGGTAATTAA 1047 0.3677 MNMNKNKFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIRKSYLDSPLSSRLLLNQPQQHYGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEISKTTPTNNNNNNNASTFGISSITKNTPVSITNSSLSFDTQNHHQNYPQNSFMYPHTTSRSLSFEDNSAPLFLDTNSSSQNNTDYRNRYVYGQKEEVDKYAFFKEPSGSTTMKSFSASSMEHDPWQLTPLTMSSSSSSSSLRQRSFSSLSNDYSSFLQLQSLNEHSKQQEQDEPRKTVHRFFDEWPHKERDQWLDLDDKSSTTQLSISIPSSAHDYPTFTSRNHHGN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02347 348 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre4g02347 348 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre4g02347 348 PANTHER GROWTH-REGULATING FACTOR 5 8 336 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre4g02347 348 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Trre4g02347 348 MobiDBLite consensus disorder prediction 121 136 - -
Trre4g02347 348 Pfam QLQ 9 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre4g02347 348 MobiDBLite consensus disorder prediction 109 136 - -
Trre4g02347 348 Pfam WRC 79 121 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02347 Trre-Chr4 22296433 22299907 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02347 9 243 GRF Transcription Factor Family AT3G13960 43.416 1.79e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre4g02347 WRC 7.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02347 - - gmx:100781613 459.914