Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02346 ATGAACAAGAACAAGTTCCCTTTTACTCCATCACAATGGCAAGAACTTGAACATCAAGCTCTTATCTACAAGTACATGGCTTCTGGTATCTCTATTCCACCTGATCTTCTTTTCACTATCAGAAAAAGCTATTTGGACAGTCCTCTCTCTTCAAGACTTTTGCTTAATCAGCCACAACAACACTATGGATGGAACTATCTGCAAATGGGTTTAGGAAGAAAAATAGATCCTGAACCAGGTAGATGCAGAAGAACAGATGGAAAAAAATGGAGATGTTCAAAAGAAGCATATCCAGATTCTAAATACTGTGAAAGACATATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAATTTCAAAAACAACACCAACAAATAATAATAATAATAATAATGCTTCAACATTTGGAATCTCATCAATTACCAAAAATACCCCTGTATCAATAACTAATTCTTCTTTGTCCTTTGATACACAAAATCATCACCAAAACTACCCTCAAAATTCCTTTATGTATCCTCATACAACATCAAGGTCATTGTCCTTTGAAGACAATAGTGCTCCCTTGTTTCTTGACACTAATTCTTCCTCTCAGAATAATACAGATTACAGGAACAGGTATGTGTATGGACAGAAAGAAGAGGTAGATAAGTATGCATTCTTCAAAGAACCTTCTGGTAGCACTACTATGAAAAGCTTCTCTGCATCATCAATGGAACATGATCCTTGGCAACTAACACCACTCACTATGAGTTCTTCCTCGTCTTCGTCATCTTTGAGACAGAGGAGCTTTTCATCTTTGTCGAATGATTACTCTTCCTTTTTGCAACTTCAGAGTCTAAATGAACACTCAAAACAGCAAGAGCAAGATGAACCTCGAAAAACCGTTCATCGCTTCTTTGACGAATGGCCACACAAGGAGAGAGATCAATGGCTTGATTTGGATGATAAATCATCCACTACTCAACTCTCAATTTCTATTCCATCTTCAGCTCATGATTATCCAACTTTCACCTCAAGAAATCACCATGATGGTTGA 1041 0.3708 MNKNKFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIRKSYLDSPLSSRLLLNQPQQHYGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEISKTTPTNNNNNNNASTFGISSITKNTPVSITNSSLSFDTQNHHQNYPQNSFMYPHTTSRSLSFEDNSAPLFLDTNSSSQNNTDYRNRYVYGQKEEVDKYAFFKEPSGSTTMKSFSASSMEHDPWQLTPLTMSSSSSSSSLRQRSFSSLSNDYSSFLQLQSLNEHSKQQEQDEPRKTVHRFFDEWPHKERDQWLDLDDKSSTTQLSISIPSSAHDYPTFTSRNHHDG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02346 346 MobiDBLite consensus disorder prediction 323 337 - -
Trre4g02346 346 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Trre4g02346 346 ProSiteProfiles QLQ domain profile. 7 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre4g02346 346 SMART QLQ_2 6 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre4g02346 346 Pfam WRC 77 119 IPR014977 -
Trre4g02346 346 Pfam QLQ 7 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre4g02346 346 PANTHER GROWTH-REGULATING FACTOR 5 7 334 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre4g02346 346 MobiDBLite consensus disorder prediction 119 134 - -
Trre4g02346 346 MobiDBLite consensus disorder prediction 323 346 - -
Trre4g02346 346 MobiDBLite consensus disorder prediction 107 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02346 Trre-Chr4 22295978 22299901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02346 7 241 GRF Transcription Factor Family AT3G13960 43.416 1.65e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre4g02346 WRC 7.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02346 - - gmx:100781613 464.151