Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02340 ATGGCTCGAGTGAGGACTACTCCACGACCAAGGTCACCATTAGTACTGCCGAAACTAACGGTACAAAAACCGGTTCCCCCTATGCAAAACAACATTTGCACTAGACAGAGTCCAGCGAAGGAAATCCAATATCGCGGTGTTCGAAAGCGACCAAAGGGTCGATATGAAGCAGCACGTGCTTATGACCAAAAAGCAATTGTATTCCGTGGGGAAATGGCTAAAACTAATTTCCCAATCTCCGAATACATATTTGATGATGCTCAGATTCCTCCTGCTGCTCCTCCTGATCAGATACCTCAATCTACTGCTCCTCTGGCTAACGATTGTGAGACTAGTGAATGTCATTCCTTAGGTTTCTAA 360 0.4528 MARVRTTPRPRSPLVLPKLTVQKPVPPMQNNICTRQSPAKEIQYRGVRKRPKGRYEAARAYDQKAIVFRGEMAKTNFPISEYIFDDAQIPPAAPPDQIPQSTAPLANDCETSECHSLGF 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02340 119 Gene3D AP2/ERF domain 56 80 IPR036955 GO:0003700|GO:0006355
Trre4g02340 119 MobiDBLite consensus disorder prediction 88 119 - -
Trre4g02340 119 SMART rav1_2 43 84 IPR001471 GO:0003700|GO:0006355
Trre4g02340 119 SUPERFAMILY DNA-binding domain 43 80 IPR016177 GO:0003677
Trre4g02340 119 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02340 Trre-Chr4 22205122 22205546 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02340 39 82 AP2-EREBP Transcription Factor Family AT1G03800 45.455 7.33e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02340 K09286 - tpra:123904184 70.8626