Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02338 ATGGCTCGAGTGAGGACACGACCAAGGTCACCATTAGTACTGCCGAAACTAACGGTACGAAAACCGGTTCCCCCTATGCAAAACAACATTTGCACTGGACAGAGTCCAGCGAAGGAAATCCAATATCGCGGTGTTCGAAAGCGACCAAGGGGTCGATATGGTGCAGAAATCAGAGACCCACTTAAAAGAAAACGTATATGGTTAGGAACTTTTAAAACTGCTGCAGAAGCAGCACGTGCTTATGACCAAAAAGCAATTGTATTCCGTGGGGAAATGGCTAAAACTAATTTCCCAATCTCCGAATACATATTTGATGATGCTCAGATTCCTCCTGGTGCTCCTCCTGTTCAGATTCCTCAATCTACTACTCCTCTAGCTAACGATCGTGAGACTAGTGAATGTCATTCCTTAGGTTTCTAA 420 0.4452 MARVRTRPRSPLVLPKLTVRKPVPPMQNNICTGQSPAKEIQYRGVRKRPRGRYGAEIRDPLKRKRIWLGTFKTAAEAARAYDQKAIVFRGEMAKTNFPISEYIFDDAQIPPGAPPVQIPQSTTPLANDRETSECHSLGF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02338 139 MobiDBLite consensus disorder prediction 120 139 - -
Trre4g02338 139 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Trre4g02338 139 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Trre4g02338 139 SUPERFAMILY DNA-binding domain 41 100 IPR016177 GO:0003677
Trre4g02338 139 Pfam AP2 domain 42 87 IPR001471 GO:0003700|GO:0006355
Trre4g02338 139 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Trre4g02338 139 FunFam Ethylene-responsive transcription factor 2 41 100 - -
Trre4g02338 139 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 119 - -
Trre4g02338 139 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Trre4g02338 139 Gene3D AP2/ERF domain 40 100 IPR036955 GO:0003700|GO:0006355
Trre4g02338 139 CDD AP2 41 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02338 Trre-Chr4 22170421 22170840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02338 30 102 AP2-EREBP Transcription Factor Family AT1G03800 61.644 4.06e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre4g02338 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02338 K09286 - tpra:123904184 108.612