Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02333 ATGTACTTTGGAGTTTTGCACAGGATATGGAACCATGAGGAAGCAACACTACTTAACAGTTTTGATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTCTGCCTGGTGAATGAGCTTGATGATAGCTTGCTTCTTGCTGCTTCATCTGACGGAAACATTCGGGTATGGAAAGACTATTCCCTGAAGGGGAAACAGAAGCTTGCCACTGCTTTCTCTTCAATTCATCGTCATAAACCTGGTGTAAGAAGTCGGAATGCAGTTGTTGATTGGCACCAACAAAGTGGTTACCTGTATGCATCATGGGAGATGTCATCAATAATGGTGTGGGATCTTGATAAAGAGCAGCTTGTTAATACTATACCTTCATCATTAGAGTGCAGTGTCTCAGCCTTGGTCGCCTCTTTCCCTTGTGTTGTTAAGGTTTCAGATGTATTTTCTATTATGCAGAGCAACACACACAACGGTTTTCCAGTGATTGAGAATACACAAGAAGTGGAGAACCACTTGTTATTGGATTAG 522 0.4119 MYFGVLHRIWNHEEATLLNSFDNHDFPDKGISKLCLVNELDDSLLLAASSDGNIRVWKDYSLKGKQKLATAFSSIHRHKPGVRSRNAVVDWHQQSGYLYASWEMSSIMVWDLDKEQLVNTIPSSLECSVSALVASFPCVVKVSDVFSIMQSNTHNGFPVIENTQEVENHLLLD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02333 173 Gene3D - 6 169 IPR015943 GO:0005515
Trre4g02333 173 ProSiteProfiles Trp-Asp (WD) repeats profile. 41 58 IPR001680 GO:0005515
Trre4g02333 173 PANTHER REGULATORY-ASSOCIATED PROTEIN OF MTOR 8 139 IPR004083 GO:0031929|GO:0031931
Trre4g02333 173 SUPERFAMILY WD40 repeat-like 8 128 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02333 Trre-Chr4 22080842 22082286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02333 126 168 Ion Channels AT5G26240 51.163 1.29e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02333 K07204 - ccaj:109794653 239.58