Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02325 ATGAAAACCCAACCCCTCGCCTCTTCTCTGTCGAACCCAATGTCCTCTCAGCTTGTCCATCTCGCTGTTGTTTTTTTGCCACGTTTCCACCTTACTGTCAAGGTCTCGCCACCTCACCGTCGTCACGACCATCTCTCCGCTCGTCGCCTCTTCTCTGTCGAACCCAAAGTCTTGTGGTATTTTGGCATTTCCCTTACCCCATCCATGACAATGAAAATACAGAGATTGAGATTTAAAAATGGAACAAAAATCAGTACAGTTGAAAATTCATTGTCTAGAATCTTTAAAGTTGCAAAACTTGTAATGGAAGAACAAAAAAGCATGAAAGACAACAAAACGACAAAAAACGAGGTTGTTCTTAGAATTTCCAACAATGAAGAAAACAAAGATTTTGGAGCTACCCAAGTTGCTGAAACAAGTTCAAACTCTCCTCAGTTCATTTCCAAGATGGGTTCATCTTCATCTCCAAAAGGGTCACATGCAGAACTCATAGAGCTTGAAAATCTTAGAACAACAAGCACTTTCTTTGGTCGATCAGAATTTTCAAAGCCAAAATCAAGAATGGTGGAACCTACATTTCCAAAAGATGCAAAATTTGTTGAAGAAAAGACTCAAATGAAGAGTTCAAATTCTCCTTCAAGGGATGTTCATGATGGAAGTGGAACTGTTGTTACCCCAAAAACCCCTAGAGAGGTTGAAGAAGAAGATGATGATGAAGAAGTGTACAAGACTGCAGAAATTGAAGTTAGTAAGAGATCTGGTAAAAAGATGAAATTTTTTAGTTGGATTGAGTTGTTAGCATTTGTTTTAATTTTAGGGTTTTTGATTGCAAGTTTAATAGTTCATAAATTGCAAAATAAAGAAATTTGGAGTTTAGAACTTTGGAAATGGTGTGTGCTTACATTGGTAATTATCTCTGGTAGATTAGTCACTAGTTGGTTTATCAATGTTTTAGTTTTCTTAATTGAAAGAAACTTTTTGTTTAAGAAGAAAGTTTTGTACTTTGTTTATGGTGTTAGAAAAAGTGTTCAAGCTTTTGTATGGTTTAGTTTGGTTCTATTGGTATGGAGTTTAATTTTTCACCAAGGTGTTAAGAGAACAAGAAAAGTTACTAGGATTCTTGATTACATCACAAGGGCACTTGCATCTTGTGTTATTTCGGCTGCTATATGGTTAGCGAAAACATTGTTGATTAAGCTATTGTCTTCATATTTTCAGTCGACTAGATTTTTCGATAGAGTTCAAGAATCGATTTTTCATCAGTACATACTTAGGACTCTTTCTGGTCCTCCGTTGATGGAGATGGTTGAAACAGTTGGCAAGAGTTCGAGTAATGGCCGACTAAGTTTCAAGACTAATAAAAAGAAAGGGAAGAAGGAACAAGAACAAGTTATTGATGTTGACAAGCTTAAGAAAATGAAACAAGGGAAAGTTTCGGCTTGGACTATGAAAGGATTGATTAATGTTATAAGGAGTTCTGGTTTGTCGACGATCAGCTATACACCAGAGAGCATCTATGAAGAAGTTAGCGACAACAATGATAATGAAATTAGAAGTGAGTGGGAAGCGAAGGCGGCTGCATATCGGATTTTCAGGAATGTTGCTAAGCCGGGAAGCAAGTACATTGAGATGGACGACCTCTTGCGCTTCATGAAAATTGAAGAAGTAGAAAATTTGCTTCCGTTATTTGAAGGAGCGGTTGAGACTAGAAGAATTAAGAGGAAGTCTCTAAAGAACTGGCTGGTGAAAGTCTACCTAGAACGCCGATCACTTGTGCATTCACTAAATGATACCAAAACAGCTGTTGATGAACTGAATAACCTTGCTTCTGCAATTGTTCTTGTTGTCGCCATTATTGTGTGGTTGCTTGTGATGGGATTCTTAACAACCCAAGTTCTTGTCTTTATTTCATCACAGCTTTTACTTGTGGTGTTTGTTTTTGGCAACACAGCTAAGACCATATTTGAAGCTATTATATTTGTTTTTGTGATGCATCCTTTTGACGTTGGTGATCGATGCGTCATTGATGGTGTTCAGATGATTGTAGAAGAGATGAACATATTGACTACAATCTTTTTGAGATACGACAATGAAAAGATATTCTATCCAAATTCAGTTCTTGCAACCAAACCAATCAGTAACTTCTACCGGAGTCCAGAAATGTGTGATTCAGTTGAATTTGCTGTTGATGTTTCAACTTCAATAGAATGTATCGGAGCCTTAAAGGCTAGATTAAAAGTATACTTGGAAAATAGGCCTCAACATTGGCGTCCAACACACAATGTAGTGGTTAAGGATATCGAGAATGTAAACAAGATGAAAATAGGTCTGTATGTTACTCACACCATAAACTTTCAGAATTATACGGATAGGAACATCAGAAGATCTGAATTAGTCTTGGAGTTAAAGAAAATCCTTGAAGATCTTCATATTAAATACCATCTGCTGCCACAAGAAGTACTTCTTAATCATGTGTCTTGTGTCAGGATGAACTCTACTGCATCGACGTTAACTATTACTTCTTGTCTACTAGTGTCCATCAACTATCAACTCAAGGAGCTGCTTTTTGGATTCTGA 2577 0.3702 MKTQPLASSLSNPMSSQLVHLAVVFLPRFHLTVKVSPPHRRHDHLSARRLFSVEPKVLWYFGISLTPSMTMKIQRLRFKNGTKISTVENSLSRIFKVAKLVMEEQKSMKDNKTTKNEVVLRISNNEENKDFGATQVAETSSNSPQFISKMGSSSSPKGSHAELIELENLRTTSTFFGRSEFSKPKSRMVEPTFPKDAKFVEEKTQMKSSNSPSRDVHDGSGTVVTPKTPREVEEEDDDEEVYKTAEIEVSKRSGKKMKFFSWIELLAFVLILGFLIASLIVHKLQNKEIWSLELWKWCVLTLVIISGRLVTSWFINVLVFLIERNFLFKKKVLYFVYGVRKSVQAFVWFSLVLLVWSLIFHQGVKRTRKVTRILDYITRALASCVISAAIWLAKTLLIKLLSSYFQSTRFFDRVQESIFHQYILRTLSGPPLMEMVETVGKSSSNGRLSFKTNKKKGKKEQEQVIDVDKLKKMKQGKVSAWTMKGLINVIRSSGLSTISYTPESIYEEVSDNNDNEIRSEWEAKAAAYRIFRNVAKPGSKYIEMDDLLRFMKIEEVENLLPLFEGAVETRRIKRKSLKNWLVKVYLERRSLVHSLNDTKTAVDELNNLASAIVLVVAIIVWLLVMGFLTTQVLVFISSQLLLVVFVFGNTAKTIFEAIIFVFVMHPFDVGDRCVIDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMCDSVEFAVDVSTSIECIGALKARLKVYLENRPQHWRPTHNVVVKDIENVNKMKIGLYVTHTINFQNYTDRNIRRSELVLELKKILEDLHIKYHLLPQEVLLNHVSCVRMNSTASTLTITSCLLVSINYQLKELLFGF 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02325 858 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 103 825 IPR016688 -
Trre4g02325 858 MobiDBLite consensus disorder prediction 204 218 - -
Trre4g02325 858 SUPERFAMILY Sm-like ribonucleoproteins 656 715 IPR010920 -
Trre4g02325 858 Pfam Mechanosensitive ion channel 607 812 IPR006685 GO:0016020|GO:0055085
Trre4g02325 858 MobiDBLite consensus disorder prediction 135 158 - -
Trre4g02325 858 FunFam Predicted mechanosensitive ion channel 666 715 - -
Trre4g02325 858 MobiDBLite consensus disorder prediction 201 237 - -
Trre4g02325 858 PIRSF Memb_At2g17000 68 836 IPR016688 -
Trre4g02325 858 Gene3D - 666 715 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02325 Trre-Chr4 21962981 21971450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02325 102 822 Mechanosensitive Ion Channel Family AT5G12080 50.068 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02325 K22048 - gmx:100777332 1035.79