Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02321 ATGGTTGATGTTCTAAGCCCTTTCACAATCCCATCTCCTCCTCCACCACCATCTTCTTTATCAAACAAAAACAATAGCATACCTATGTTATACTATGGTCTAGTGGTGATGGGAATTGGAGCTATAGTCCTAGCAATTTACAACATCATCATAATAAAACGTTGCAATAGGAACCACAATCAATTATCACAACCCACAAGACCAAATCTTATAGATATTGAAGGAGGTGCAAATAGTAATAATAATATGAGCTTTGAAAACCAACAAAGGAACTTGCTTTCAAGCTTCAAGTACAAGAAGGAAGTGATAGCAAAAGAAGAAGAACAAAAGGGTTATTATGATTATGAATGTTCAGTTTGCTTAATGGTTTATGAAGAAGGAGAAGATGTTAGGAAACTACCTAAGTGTAAACATTGTTTTCATGCTCTTTGTATAGATATGTGGCTTTATTCTCATTTTGATTGTCCAATTTGTAGAACACCTGTTGGCCCATTTTGTCATGATTTTCAAGAAGAAAATTCTCGTGATGGGTTGATTGAATCTGGTGGGAGCATCAATGTTTGA 564 0.3511 MVDVLSPFTIPSPPPPPSSLSNKNNSIPMLYYGLVVMGIGAIVLAIYNIIIIKRCNRNHNQLSQPTRPNLIDIEGGANSNNNMSFENQQRNLLSSFKYKKEVIAKEEEQKGYYDYECSVCLMVYEEGEDVRKLPKCKHCFHALCIDMWLYSHFDCPICRTPVGPFCHDFQEENSRDGLIESGGSINV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02321 187 CDD RING-H2_EL5-like 116 159 - -
Trre4g02321 187 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 164 - -
Trre4g02321 187 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Trre4g02321 187 FunFam RING-H2 finger protein ATL1 72 164 - -
Trre4g02321 187 Pfam Ring finger domain 116 159 IPR001841 -
Trre4g02321 187 SUPERFAMILY RING/U-box 95 165 - -
Trre4g02321 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 164 IPR013083 -
Trre4g02321 187 SMART ring_2 117 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02321 Trre-Chr4 21925913 21926476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02321 34 162 C3H Transcription Factor Family AT5G17600 37.956 2.17e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02321 - - aprc:113852327 257.684