Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02312 ATGGAAGTTGCTGCTAGTGGTGGTGGTGGTGGTGGACCTCAGTTCGACCCTCGCACTGTTGAGGCTGTTTTCCGTGACTTCAAGGGTCGTAGAGCTGGATTGATCAAAGCTCTCACTTCTGATGTTGATGAATTTTATCAGAAGTGTGATCCTGAGAAGGAGAATCTTTGTCTGTATGGATATCCTGGTGGATTATGGGACGTTGCTTTACCTGCTGAAGAAGTTCCTCCTGAACTTCCGGAACCTGCATTGGGCATCAATTTTGCCAGGGATGGAATGCAGGAAAAAGACTGGCTATCTTTAGTCGCTGTTCACAGTGATACTTGGCTACTCTCAGTTGCTTTCTACTTTGGAGCAAGATTTGGTTTTGACAGGGCCGACAGGAAACGACTTTTCACTCTGATTAATGATTTGCCAACAATATTTGAGGTTGTAACTGGATCTGCTAAGAAACAGGCAAAGGAAAAGACATCAGGCTCGAGCCACAACAGCAACAAATCAAAGTCTGGTTCAAAAGCGCATGGATCTGAATCGGCAAAGCATTCAAAGCCTGCAAAAGAAGATGATGATGATGAAATTGACGTAGAAGATGGAGGAGATCAAGGGGAGTGTGCTGCGTGTGGTGAGAGCTATGATAAAGCACCTGAAGCGTTCTGGATCTGTTGCGACATATGTGAGAAATGGTATCATGGAAAGTGTGTCAAGATCACTCCTGCCCGAGCGGAGCACATCAAGCAGTACAAGTGTCCTGCATGCAACAATAAGAGAGCTCGAACTTGA 780 0.4564 MEVAASGGGGGGPQFDPRTVEAVFRDFKGRRAGLIKALTSDVDEFYQKCDPEKENLCLYGYPGGLWDVALPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDRADRKRLFTLINDLPTIFEVVTGSAKKQAKEKTSGSSHNSNKSKSGSKAHGSESAKHSKPAKEDDDDEIDVEDGGDQGECAACGESYDKAPEAFWICCDICEKWYHGKCVKITPARAEHIKQYKCPACNNKRART 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02312 259 MobiDBLite consensus disorder prediction 152 172 - -
Trre4g02312 259 FunFam PHD finger alfin-like protein 196 254 - -
Trre4g02312 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 259 IPR013083 -
Trre4g02312 259 CDD PHD_AL_plant 204 255 IPR044104 -
Trre4g02312 259 SMART PHD_3 203 253 IPR001965 -
Trre4g02312 259 ProSitePatterns Zinc finger PHD-type signature. 204 252 IPR019786 -
Trre4g02312 259 MobiDBLite consensus disorder prediction 152 196 - -
Trre4g02312 259 ProSiteProfiles Zinc finger PHD-type profile. 201 255 IPR019787 -
Trre4g02312 259 PANTHER CPG BINDING PROTEIN 16 258 IPR045104 GO:0006355|GO:0042393
Trre4g02312 259 SUPERFAMILY FYVE/PHD zinc finger 199 256 IPR011011 -
Trre4g02312 259 MobiDBLite consensus disorder prediction 173 188 - -
Trre4g02312 259 Pfam Alfin 19 147 IPR021998 GO:0006355|GO:0042393
Trre4g02312 259 Pfam PHD-finger 204 254 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02312 Trre-Chr4 21804032 21808001 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02312 10 258 Alfin-like Transcription Factor Family AT3G42790 68.526 2.78e-109 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trre4g02312 Alfin 1.5e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02312 K26274 - rcu:8272513 386.726