Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02310 ATGGAAGTTGCTGCTACTGGTGGTGGTGGTGGTGGTGGTGGTGGACCTCAGTTTGACCCTCGGACTGTTGAGGCCGTTTTCCGTGACTTCAAGGGTCGTAGAGCTGGCTTAATCAAAGCTCTCACTTCTGATGTTGATGAATTTTATCAGAAGTGTGATCCTGAGAAGGAGAATCTTTGTCTGTATGGATATCCTGGTGGATTATGGGACGTTGCTTTACCTGCTGAAGAAGTTCCTCCTGAACTTCCGGAACCTGCATTGGGCATCAATTTTGCCAGGGATGGAATGCAGGAAAAAGACTGGCTATCTTTAGTCGCTGTTCACAGTGATACTTGGCTACTCTCAGTTGCTTTCTACTTTGGAGCAAGATTTGGTTTTGACAGGGCCGACAGGAAACGACTTTTCACTCTGATTAATGATTTGCCAACAATATTTGAGGTTGTAACTGGATCTGCTAAGAAACAGGCAAAGGAAAAGACATCAGGCTCGAGCCACAACAGCACCAAATCAAAGTCTGGTTCAAAAGCGGTGATAATTCCTGAGGCAGAACTCATTCCTCAGTTCAAGATTACCGAAGTACATGTAGCAGGTCTTAAAACTGAGCCTCAGAAAAAGAAGCTTTGGGGTACCTCGACGCAGCAACAATCCGGTTCGCGCTGGTTGCTTGCTAATGGTATGGGGAAGAGCAATAAGTTTCCATCAATGAAATCGAAAGCTGCATCTAAATCTGTTGCTCCGGTTACCACAAAGGTGCAGCCTGGTGACACCTTGTGGAGCATTTCTTCGCGTATTTTTGGTTCTGGAAAAAAATGGAAGGATTTGGCAGCGCTAAATCCGCATATAAGAAACCCTAATGTCATTATACCAAATGACACTATTAGACTTAGTTGA 891 0.4478 MEVAATGGGGGGGGGPQFDPRTVEAVFRDFKGRRAGLIKALTSDVDEFYQKCDPEKENLCLYGYPGGLWDVALPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDRADRKRLFTLINDLPTIFEVVTGSAKKQAKEKTSGSSHNSTKSKSGSKAVIIPEAELIPQFKITEVHVAGLKTEPQKKKLWGTSTQQQSGSRWLLANGMGKSNKFPSMKSKAASKSVAPVTTKVQPGDTLWSISSRIFGSGKKWKDLAALNPHIRNPNVIIPNDTIRLS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02310 296 Pfam Alfin 22 150 IPR021998 GO:0006355|GO:0042393
Trre4g02310 296 SMART LysM_2 248 296 IPR018392 -
Trre4g02310 296 MobiDBLite consensus disorder prediction 1 20 - -
Trre4g02310 296 SUPERFAMILY LysM domain 247 295 IPR036779 -
Trre4g02310 296 PANTHER CPG BINDING PROTEIN 19 215 IPR045104 GO:0006355|GO:0042393
Trre4g02310 296 Pfam LysM domain 250 295 IPR018392 -
Trre4g02310 296 CDD LysM 250 295 IPR018392 -
Trre4g02310 296 ProSiteProfiles LysM domain profile. 247 295 IPR018392 -
Trre4g02310 296 MobiDBLite consensus disorder prediction 155 174 - -
Trre4g02310 296 Gene3D LysM domain 238 296 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02310 Trre-Chr4 21785472 21789329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02310 13 177 Alfin-like Transcription Factor Family AT5G20510 72.727 8.88e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02310 K26274 - vvi:100263503 285.034