Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02300 ATGTCATCCTCCACAAAAGTGACCAAAAAAGCTTCATCTTCCCAAAGAATGACTCCAAGAGTGACTCTAGCTAGGTCTGAGCAAACAATGGTCCAGTGTCTGCCAAACAGAGGAGGATTCTTAACAGCTCACATCATTGGACAGGATTATGGGGAAATGAACCCAAAGTTTATCTTTGAAGTTTATGAAGAACTTGATTCAAAACTGACAATCTGTGATGAAACTAACCACAACATGAAAGTTGAATGGAATGGATCCTGTCAACATCCTTTAATACTGACTGGCTGGAAAAACCTGAGGAGGTTCTTTGGAATCACTGGGAACAAAATGCTTCTCATGACTTATCTTGGAACTTCAGCTTTCTTGCTTGAGATTCTCCCTCAACCATTTGATCCATTGAACTTGCCTTCTTATCATTCATACCGGACTTTTGAAGCTGACCCAACATCATTTGATGTTAAGCTCACTGCTTATCATGTATCAGGTTCTCAATTGACTTTGACAAAGGAGTTTGCTGCCTACATTCGCCAAACAAAGTTCAAAACATTGCTTCTTTATGGACCAGGTGGAGATGAATTTAGCTGCTCAATTCTGAGGAGCAAAAAGCAAACTAAAATTGGTAAAGGTTGGAAAGAATTTGTGGATAAGAATAGCTTTGAAGAAGGTGAAGTGCTCAACTTTAAGTTTGTCAACAAGTATGAATCAAATGTCATGAGGGTTATTCTCCGCTAA 732 0.3907 MSSSTKVTKKASSSQRMTPRVTLARSEQTMVQCLPNRGGFLTAHIIGQDYGEMNPKFIFEVYEELDSKLTICDETNHNMKVEWNGSCQHPLILTGWKNLRRFFGITGNKMLLMTYLGTSAFLLEILPQPFDPLNLPSYHSYRTFEADPTSFDVKLTAYHVSGSQLTLTKEFAAYIRQTKFKTLLLYGPGGDEFSCSILRSKKQTKIGKGWKEFVDKNSFEEGEVLNFKFVNKYESNVMRVILR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02300 243 MobiDBLite consensus disorder prediction 1 21 - -
Trre4g02300 243 Pfam B3 DNA binding domain 153 238 IPR003340 GO:0003677
Trre4g02300 243 CDD B3_DNA 150 232 IPR003340 GO:0003677
Trre4g02300 243 ProSiteProfiles B3 DNA-binding domain profile. 150 243 IPR003340 GO:0003677
Trre4g02300 243 Gene3D - 137 243 IPR015300 -
Trre4g02300 243 SMART B3_2 151 237 IPR003340 GO:0003677
Trre4g02300 243 SUPERFAMILY DNA-binding pseudobarrel domain 145 238 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02300 Trre-Chr4 21737521 21738793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02300 160 229 REM Transcription Factor Family AT3G06220 28.571 1.73e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre4g02300 B3 2.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02300 - - tpra:123900141 231.491