Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02276 ATGCATTTTTACCATCTTTTTAGGGTTTTTGAGTTTAGTGGTATTGTTAGAAAATTCTTACTTCAAAATTCACTCTCACTATCCTTTCTGAGTTCTTACACCAATTTCATAATCATCCTCCCAAAATCAAGAGAAGATTTGTTTCTTGAGGAAACAAGAAGATTAAAAAACAGTAGGGACTTCATAGCTCCTTGTAAGTGCAAAGGTACTTCAAAATATGTTCATCGAGAGTGTTTGGATCATTGGCGATCTGTTAAGGTGATGAAAATAGCAGACAAAAGAGCTGATATCGTACGAATAACATTTCACGGGAAGAAAGAAGTTGATGCATGTTTTGAGATTAAGAACTCACTTGTGCAGAAAAACTACAACATACCATTGGTGGCTGACATTCATTTTGTTGAAATAACCTCAATCTTTAGTTTGGTTGAAATCACCAAACTATCAATTTGTTTAACTGAGAGCATTGTGGAGACTTTGGTGAAGATGCAAGTTTCCTCAATCCATGGATTTATGTGTCATAAGGTAGTATTTTTGTCGGTCGCAGGTCCGCAATGA 558 0.3548 MHFYHLFRVFEFSGIVRKFLLQNSLSLSFLSSYTNFIIILPKSREDLFLEETRRLKNSRDFIAPCKCKGTSKYVHRECLDHWRSVKVMKIADKRADIVRITFHGKKEVDACFEIKNSLVQKNYNIPLVADIHFVEITSIFSLVEITKLSICLTESIVETLVKMQVSSIHGFMCHKVVFLSVAGPQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02276 185 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 58 107 - -
Trre4g02276 185 Gene3D - 79 148 IPR011005 GO:0044237
Trre4g02276 185 SMART ringv_2 53 89 IPR011016 GO:0008270
Trre4g02276 185 Pfam GcpE protein 86 135 IPR004588 GO:0016114|GO:0046429
Trre4g02276 185 ProSiteProfiles Zinc finger RING-CH-type profile. 48 105 IPR011016 GO:0008270
Trre4g02276 185 Pfam RING-variant domain 56 85 IPR011016 GO:0008270
Trre4g02276 185 SUPERFAMILY RING/U-box 56 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02276 Trre-Chr4 21476559 21480966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02276 57 86 C3H Transcription Factor Family AT2G22120 83.333 6.82e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02276 K03526 - vvi:100257071 87.0409