Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02271 ATGAATAGAGGGAGTTTAGAACCCAATCTAAAACTCACTCTTCCTTCATCTAATCAAGCTTCTTTTGCAAAGTTCTTGACACAAAGTGGTACTTTTAAAGAAGGGAATTTGCTTGTTAATAAAGATGGAGTTAGAATTGTCTCTGAAAGTGAAGATGAAGCTCAACCACCAATCAAGCCAGTTAACAATCAGATAAGTTTAGCAGAGCTTGATACAATCAAAGTGGTTGGAAAAGGAAATGGAGGGATAGTTCAATTGGTGCAACACAAATGGACTAATCAATTTTTTGCATTAAAGCAAATTCAAATGACTCTTGAGGAATCTACGTGCAGGCGAATAGCGCAAGAGCTAAAAATCAATCAATCATCACAATGTGCTCATGTTGTTGTTTGCTACCAAGCAATCTATTATAATGGCACCATATCAATTATCTTAGAGTATATGGATGGAGGGTCCTTAGAGGATCTTCTTAACAAAGTTAAAACAATTCCAGAACCATTTCTTGCTGCCATTTGTAAGCAGGTGTTGAAGGGTTTGATGTATCTTCATCATGAGAAACACATTATTCATAGGGACTTGAAACCTTCTAATATATTGATAAATCATAGAGGGGAGGTAAAGATTACTGATTTTGGTGTAAGTATAATCATGGAAACTACATCTGGTCAAGCAAATACTTTCATCGGTACATACAACTATATGTCGCCAGAAAGAATCAAAGGAGGCGATCAAGGCTACAACTACAAAAGTGATATATGGAGCTTAGGACTGATGTTGCTCAAGTGCGCTACTGGGCGTTTTCCATATACTCCGCCCGATAATAGTGAGGGATGGGAAAATTTGTTTCAGCTTATTGAAACCATTGTTGAAAAACCTTCACCTAGTGCTCCATCCGATGAATGTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTGCAGAAAAATCCAAGGGACAGACCATCAACACGAAACCTATTGAGGCATCCTTTTGTGAACATGTATGATGACTTGGAGGTGGATCTTTCGGCTTATTTCTCCAATGCAGGGTCTACACTTGCAACCATATAA 1071 0.3782 MNRGSLEPNLKLTLPSSNQASFAKFLTQSGTFKEGNLLVNKDGVRIVSESEDEAQPPIKPVNNQISLAELDTIKVVGKGNGGIVQLVQHKWTNQFFALKQIQMTLEESTCRRIAQELKINQSSQCAHVVVCYQAIYYNGTISIILEYMDGGSLEDLLNKVKTIPEPFLAAICKQVLKGLMYLHHEKHIIHRDLKPSNILINHRGEVKITDFGVSIIMETTSGQANTFIGTYNYMSPERIKGGDQGYNYKSDIWSLGLMLLKCATGRFPYTPPDNSEGWENLFQLIETIVEKPSPSAPSDECSPEFCSFISACLQKNPRDRPSTRNLLRHPFVNMYDDLEVDLSAYFSNAGSTLATI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02271 356 FunFam Mitogen-activated protein kinase kinase 6 151 351 - -
Trre4g02271 356 CDD PKc_MAPKK_plant_like 68 336 - -
Trre4g02271 356 Gene3D Phosphorylase Kinase; domain 1 45 149 - -
Trre4g02271 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Trre4g02271 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 336 - -
Trre4g02271 356 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02271 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Trre4g02271 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02271 356 FunFam Mitogen-activated protein kinase kinase 1 51 149 - -
Trre4g02271 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02271 356 SUPERFAMILY Protein kinase-like (PK-like) 69 339 IPR011009 -
Trre4g02271 356 Gene3D Transferase(Phosphotransferase) domain 1 150 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02271 Trre-Chr4 21389698 21393124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02271 27 353 MAP Kinase Kinase Gene Family AT4G26070 65.138 4.68e-163 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre4g02271 Pkinase 3.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02271 K20603 - gmx:100789734 558.91