Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02270 ATGACAAATCTTATGGCAAATACAGCAACAGTTTTAATATTAAATCCTGCTTCAATTGAGGGTTGTCAATCCTTTTCTGTAGGAAGTGACGACAACGACGACACAGATATTAGTCCACAACATAAAATATCAGTGCCTCTAGAGGTTAATGAGAATCAAGTTGCAGCTGAAACTGTCGCAGAAATGGTTCTTGAAAGTGACAGTAATGGAAGAAATGATGATGAATTCATGATGGCTAATGATTTTCCGCGTATACATAATCCATCCTCTCAATCTGATGTTTGTAACAAAATCGATTCTTTTAAGGAGGAGTCTGCAATTTCAAGGCAAAATTTGTCAGAAATGAACACACCAAATACAGTCATGGTTGATGGTAATAACCATGATCAGTCTGTTTTGTACAAGTCCGTGAAGAACATGGCTTCCGTTGTGATGAAACATGAGAGTGAAGATGGAAGTAAATCCGATGATTCTGATTCAAAACCAATTGCTGCAGTTAATGAGATGTCAGAGAAGCAAACATGCACAACAAACTGTGATACTCCTCTTTGCGGTTTCTCATCGGTTTGTGGAAGGAGACAAGAAATGGAAGATGCTATTGTTGTTAAGCCTCAACTTTTTCATGTACCTTCAATGATGCTAATGGACGACCATGTGAACGAAAACACAAAACACTCACTAGCACACGTTTTTGGTGTCTTTGATGGACATGGGGGAAGTCAGGTTGCCAATTACTGCCGGGAACATCTTCATTCAGTTTTGGTTGAGGAGATAGAAGCTGCAGAATCAAGTTTACCTGAAACTAATGAAAAGAACAATTGGCAGGACCAATGGAAGAAAGTACTCACCAATTGCTTTCAAAAAGTAGATGATAAGATCGTAGGAGATAATGCAGATAATGGTGGAAGTAATGGCAATGACGGCTCTGAGTCAAGTACTGAAGAAACTCTTGCTCCTGAGTGTGCTGGATCCACTGCACTGGTTGCAGTTTTGACTCAAACCCATATAATAGTTGCGAATTGCGGCGATTCAAGAGCGGTCTTATGTCGAGGAAAAGAAGCACTGTCATTGTCTACTGACCATAGACCAGATAGAGAGGATGAGCAGGAAAGGATAGAAGCTGCCGGAGGAAAGATCATACAATGGAATGGATACCGTGTTCTTGGTGTTCTGGCAGTGTCAAGGTCCATAGGTGATAGATACTTGAAACCGTGGATAATTCCAGATCCAGAAGTCAACTGCATCCTTCGAGAGAAAACAGACGAGTGCCTTATTCTAGCAAGTGATGGTTTATGGGATGTCATAACAAATGATGAAGCCTGTGAAATTGCTCGAAAGCGAATCCTTATTTGGCATAAGAAGAATGGAACCAATGTATCAACAGGACAAGTCCACGGGGTTGATCCGGCAGCTCAGTATGCTGCAGATTATCTATCAAAACTTGCCCTTCAAAGGGGAAGCAAAGATAATATCTCAGTTATTGTTATAGACTTGAAGGCTCAAAGAGAGTTCAAGAGAAAGGAATAA 1527 0.4054 MTNLMANTATVLILNPASIEGCQSFSVGSDDNDDTDISPQHKISVPLEVNENQVAAETVAEMVLESDSNGRNDDEFMMANDFPRIHNPSSQSDVCNKIDSFKEESAISRQNLSEMNTPNTVMVDGNNHDQSVLYKSVKNMASVVMKHESEDGSKSDDSDSKPIAAVNEMSEKQTCTTNCDTPLCGFSSVCGRRQEMEDAIVVKPQLFHVPSMMLMDDHVNENTKHSLAHVFGVFDGHGGSQVANYCREHLHSVLVEEIEAAESSLPETNEKNNWQDQWKKVLTNCFQKVDDKIVGDNADNGGSNGNDGSESSTEETLAPECAGSTALVAVLTQTHIIVANCGDSRAVLCRGKEALSLSTDHRPDREDEQERIEAAGGKIIQWNGYRVLGVLAVSRSIGDRYLKPWIIPDPEVNCILREKTDECLILASDGLWDVITNDEACEIARKRILIWHKKNGTNVSTGQVHGVDPAAQYAADYLSKLALQRGSKDNISVIVIDLKAQREFKRKE 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02270 508 MobiDBLite consensus disorder prediction 299 318 - -
Trre4g02270 508 SUPERFAMILY PP2C-like 181 499 IPR036457 -
Trre4g02270 508 CDD PP2Cc 184 498 IPR001932 -
Trre4g02270 508 SMART PP2C_4 172 496 IPR001932 -
Trre4g02270 508 Pfam Protein phosphatase 2C 185 491 IPR001932 -
Trre4g02270 508 ProSiteProfiles PPM-type phosphatase domain profile. 183 498 IPR001932 -
Trre4g02270 508 PANTHER PROTEIN PHOSPHATASE 150 498 IPR015655 GO:0004722|GO:0006470
Trre4g02270 508 ProSitePatterns PPM-type phosphatase domain signature. 230 238 IPR000222 GO:0043169
Trre4g02270 508 FunFam Protein phosphatase 2C 51 174 506 - -
Trre4g02270 508 MobiDBLite consensus disorder prediction 294 318 - -
Trre4g02270 508 Gene3D - 170 508 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02270 Trre-Chr4 21385732 21388374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02270 181 507 PP2C-type Phosphatase Gene Family AT4G26080 56.757 4.53e-130 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02270 K14497 - gmx:100812974 541.576