Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02269 ATGGAGGAAATAAGTTCGACGGTCGCAGTGCCATTAACACTTGGGAATTTAATACAAAAGGAGTCAGTAATGACAAATCTTATGGCAAATACAGCAACAGTTTTAATATTAAATCCTGCTTCAATTGAGGGTTGTCAATCCTTTTCTGTAGGAAGTGACGACAACGACGACACAGATATTAGTCCACAACATAAAATATCAGTGCCTCTAGAGGTTAATGAGAATCAAGTTGCAGCTGAAACTGTCGCAGAAATGGTTCTTGAAAGTGACAGTAATGGAAGAAATGATGATGAATTCATGATGGCTAATGATTTTCCGCGTATACATAATCCATCCTCTCAATCTGATGTTTGTAACAAAATCGATTCTTTTAAGGAGGAGTCTGCAATTTCAAGGCAAAATTTGTCAGAAATGAACACACCAAATACAGTCATGGTTGATGGTAATAACCATGATCAGTCTGTTTTGTACAAGTCCGTGAAGAACATGGCTTCCGTTGTGATGAAACATGAGAGTGAAGATGGAAGTAAATCCGATGATTCTGATTCAAAACCAATTGCTGCAGTTAATGAGATGTCAGAGAAGCAAACATGCACAACAAACTGTGATACTCCTCTTTGCGGTTTCTCATCGGTTTGTGGAAGGAGACAAGAAATGGAAGATGCTATTGTTGTTAAGCCTCAACTTTTTCATGTACCTTCAATGATGCTAATGGACGACCATGTGAACGAAAACACAAAACACTCACTAGCACACGTTTTTGGTGTCTTTGATGGACATGGGGGAAGTCAGGTTGCCAATTACTGCCGGGAACATCTTCATTCAGTTTTGGTTGAGGAGATAGAAGCTGCAGAATCAAGTTTACCTGAAACTAATGAAAAGAACAATTGGCAGGACCAATGGAAGAAAGTACTCACCAATTGCTTTCAAAAAGTAGATGATAAGATCGTAGGAGATAATGCAGATAATGGTGGAAGTAATGGCAATGACGGCTCTGAGTCAAGTACTGAAGAAACTCTTGCTCCTGAGTGTGCTGGATCCACTGCACTGGTTGCAGTTTTGACTCAAACCCATATAATAGTTGCGAATTGCGGCGATTCAAGAGCGGTCTTATGTCGAGGAAAAGAAGCACTGTCATTGTCTACTGACCATAGACCAGATAGAGAGGATGAGCAGGAAAGGATAGAAGCTGCCGGAGGAAAGATCATACAATGGAATGGATACCGTGTTCTTGGTGTTCTGGCAGTGTCAAGGTCCATAGGTGATAGATACTTGAAACCGTGGATAATTCCAGATCCAGAAGTCAACTGCATCCTTCGAGAGAAAACAGACGAGTGCCTTATTCTAGCAAGTGATGGTTTATGGGATGTCATAACAAATGATGAAGCCTGTGAAATTGCTCGAAAGCGAATCCTTATTTGGCATAAGAAGAATGGAACCAATGTATCAACAGGACAAGTCCACGGGGTTGATCCGGCAGCTCAGTATGCTGCAGATTATCTATCAAAACTTGCCCTTCAAAGGGGAAGCAAAGATAATATCTCAGTTATTGTTATAGACTTGAAGGCTCAAAGAGAGTTCAAGAGAAAGGAATAA 1596 0.4054 MEEISSTVAVPLTLGNLIQKESVMTNLMANTATVLILNPASIEGCQSFSVGSDDNDDTDISPQHKISVPLEVNENQVAAETVAEMVLESDSNGRNDDEFMMANDFPRIHNPSSQSDVCNKIDSFKEESAISRQNLSEMNTPNTVMVDGNNHDQSVLYKSVKNMASVVMKHESEDGSKSDDSDSKPIAAVNEMSEKQTCTTNCDTPLCGFSSVCGRRQEMEDAIVVKPQLFHVPSMMLMDDHVNENTKHSLAHVFGVFDGHGGSQVANYCREHLHSVLVEEIEAAESSLPETNEKNNWQDQWKKVLTNCFQKVDDKIVGDNADNGGSNGNDGSESSTEETLAPECAGSTALVAVLTQTHIIVANCGDSRAVLCRGKEALSLSTDHRPDREDEQERIEAAGGKIIQWNGYRVLGVLAVSRSIGDRYLKPWIIPDPEVNCILREKTDECLILASDGLWDVITNDEACEIARKRILIWHKKNGTNVSTGQVHGVDPAAQYAADYLSKLALQRGSKDNISVIVIDLKAQREFKRKE 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02269 531 FunFam Protein phosphatase 2C 51 199 529 - -
Trre4g02269 531 SMART PP2C_4 195 519 IPR001932 -
Trre4g02269 531 CDD PP2Cc 207 521 IPR001932 -
Trre4g02269 531 ProSitePatterns PPM-type phosphatase domain signature. 253 261 IPR000222 GO:0043169
Trre4g02269 531 MobiDBLite consensus disorder prediction 322 341 - -
Trre4g02269 531 SUPERFAMILY PP2C-like 204 522 IPR036457 -
Trre4g02269 531 Gene3D - 193 531 IPR036457 -
Trre4g02269 531 ProSiteProfiles PPM-type phosphatase domain profile. 206 521 IPR001932 -
Trre4g02269 531 Pfam Protein phosphatase 2C 208 514 IPR001932 -
Trre4g02269 531 PANTHER PROTEIN PHOSPHATASE 173 521 IPR015655 GO:0004722|GO:0006470
Trre4g02269 531 MobiDBLite consensus disorder prediction 317 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02269 Trre-Chr4 21385663 21388374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02269 204 530 PP2C-type Phosphatase Gene Family AT4G26080 56.757 6.91e-130 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02269 K14497 - gmx:100812974 572.007