Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02264 ATGTGTGCTTCTGTAATGTGTAGGTCTGAATCAGAATACAAATTTATTGGAAAGATCGTTGAGGAAGTCACTAAGAAGACCAACCGCACTCGTTTACATGTCGCTGATAACCCAGTTGCGCTAGAGTCGCCAGTGTTAGAAGTGGCATCTCTTCTAGGGTCAGATTCTGATAAAGCAGCCAACATGGTTGGCATTTATGGAATCGGTGGTGTGGGTAAATCAACATTGGCTCGTGCCGTGTACAACAAAATTTCTGATCAATTTGATGGTGTGTGTTTTCTTGCTGATATAAGAGCCAGTGCAACTAACAATGGTCTTGTGCAACTCCAAGAAAGACTACTTTCTGAAATACTTTATGAGAAGGATATTAAAGTGGGAGATGTTTACACAGGAATTTCAATCATAAAAAAGAGACTCCAAAGAAAAAAGGTACTTTTGGTTCTTGATGATGTTGACAAAGCGAAGCAGATACACGTACTTGCAGGGGGACAGGATTGGTTTGGCTCCGGTAGCAAGATCATAATCACAACAAGAGACAAACATTTGTTGTCTATTCATGAGTTTCTAAAGTTATATGAGGTTAAACAGTTAAATCATGAAAAATCGCTTGAGTTGTTTAATTGGCATGCCTTTAGAAACAGAAAAATTGATCCATGTTATGGCGATATTTCAAACCGTGCAGTTTCTTATGCTCATGGCCTTCCATTAGCTTTGGAGGTCATAGGTTCTCACTTGTTTGACAAAAGTTTAAATGTATGGAAATCTGCATTAGATAAATATGAAAGAATTCTTCATAAAGACATTCTTGAAATTCTTAAAGTTAGCTATGATGATTTGGATGAAGACGAGAAGGGTATTTTTCTTGACATCGCTTGTTTCTTCAATTCGTATGAAATGAGCTATGTCAAAGAAATATTATACCTGCATGGTTTTGAAGTGGAAAATGGCATTCAAGTTCTGACTGACAAATCCCTCATAAAAGTTGATGGCAATGGTTGTGTGAGAATGCATGACTTAGTTCAAGATATGGGCAGAGAAATCGTGAAGCAGGAATCACCATCGGAGCCTGGAAGACGCAGTAGATTATGGTTTGATGACGACATAGTTCATGTTTTGGAAGAAAAGACGGGCACTGATACAATTGAAGTCATAATCATCAACTTATGCAATGACAAAGAAGTGCAGTGGAGTGGAAAATCCTTCAAGAAGATGAAAAACCTGAAAATTCTTATAGTTAGAAGCGCACGGTTTTCTAGGGGCCCTCAAAAACTACCAAACAGTTTGAGAGTTCTAGACTGGAGTGGATATCCATCAGATTCCTTACCAGCTGATTTTAATCCTAAGAATCTAATGATACTTAGTTTGCCTGAAAGTTGCCTTATATTGTTCAAATCGCTCAAGGTGTTTGAGTCTTTGAACTTTCTGGACTTTGAAGGCTGCAAGTTATTAACCGAGCTGCCTAGCTTGTCTGCTCTACCAAATTTGGGGGCACTGTGTCTTGACAATTGCACTAATTTAATTACGATTCATAAGTCAGTCGGTTTTCTTGAAAGACTCGTGTTATTGAGTACTCAAGGATGCAACCAGCTAGAAATTTTGGTGCCCTGCATCAATATGTCATCTCTAGAGACTCTAGATATGAGGGGTTGCTCGCGTCTCAAGAGCTTCCCGGAAGTTTTGGGAGTAATGGAGAATATAAGAGATGTTTATCTAGACCGTACTTCCATAGATAAGTTGCCATTTTCAGTTGGAAATCTTGTTGGCCTCCAACGATTGTTCTTGAGGGAATGCAAGAACCTAACTCAACTACCGGACAGTATTCGTATATTGCCTAAACTTGAGATAATAATGTTTTATGATTGTAGAGGATTTCAATTGTTTGAGGATAAAGAAAAAGTTGGTTCAAAAGTGTTTCCAAAAACCATGCTTGTTTTTAATGAAGGAAAGGGGACAATGCTTGATGTGTGTTCTCTTAACATATGTGCCAATAATGCCATAGAAGTATGCGAACCTAATCAAGAAATCATCGCCAATAATGATTTCGGATTCGTGTTTAAAGGGATTTTTGAAGGGAGAGTAAATTGGTACCAGCAAGGAAACAAGAAACCATCGTTGTGTTTTTGGTTTCAAAAGAAATTCCCTCGGATAATTCTATGTTGTGCTGGAGAACCTCCAATAAATAAAGACAATATGGTATTGGATTTCAAGTTGAGTGTACTCATCAATGGCAGTAAGCAATTCAGTTCTTCATGTAACTACATATTTTCTGCAGGAAGGAAATCAGACCAAATACTTATGTGTGATTTAGTGTGCAAAGGGGAAAGATCATATTTAGAGCATGAATGGAATAAAGTAGAGATTTTATATGAGTTCAAATACCCTATGCCATTAGGCTCTGAAAGAATAATGGCCAACCATGATAGGACCACAACAAGAAATCCAAGTTGGTCCCTCATTTATGTCTGTCAAGATATCAAAGAGGATGTCAAATTTATGTCTGAGTTTATGGAATGCAAAGAGGATGAGAGAAGAAAGGAAACACTATTGGGTGTTCACTCTATGCTCAAGCATCATGGATTTGATTGGATTGGGTTTTGA 2598 0.3788 MCASVMCRSESEYKFIGKIVEEVTKKTNRTRLHVADNPVALESPVLEVASLLGSDSDKAANMVGIYGIGGVGKSTLARAVYNKISDQFDGVCFLADIRASATNNGLVQLQERLLSEILYEKDIKVGDVYTGISIIKKRLQRKKVLLVLDDVDKAKQIHVLAGGQDWFGSGSKIIITTRDKHLLSIHEFLKLYEVKQLNHEKSLELFNWHAFRNRKIDPCYGDISNRAVSYAHGLPLALEVIGSHLFDKSLNVWKSALDKYERILHKDILEILKVSYDDLDEDEKGIFLDIACFFNSYEMSYVKEILYLHGFEVENGIQVLTDKSLIKVDGNGCVRMHDLVQDMGREIVKQESPSEPGRRSRLWFDDDIVHVLEEKTGTDTIEVIIINLCNDKEVQWSGKSFKKMKNLKILIVRSARFSRGPQKLPNSLRVLDWSGYPSDSLPADFNPKNLMILSLPESCLILFKSLKVFESLNFLDFEGCKLLTELPSLSALPNLGALCLDNCTNLITIHKSVGFLERLVLLSTQGCNQLEILVPCINMSSLETLDMRGCSRLKSFPEVLGVMENIRDVYLDRTSIDKLPFSVGNLVGLQRLFLRECKNLTQLPDSIRILPKLEIIMFYDCRGFQLFEDKEKVGSKVFPKTMLVFNEGKGTMLDVCSLNICANNAIEVCEPNQEIIANNDFGFVFKGIFEGRVNWYQQGNKKPSLCFWFQKKFPRIILCCAGEPPINKDNMVLDFKLSVLINGSKQFSSSCNYIFSAGRKSDQILMCDLVCKGERSYLEHEWNKVEILYEFKYPMPLGSERIMANHDRTTTRNPSWSLIYVCQDIKEDVKFMSEFMECKEDERRKETLLGVHSMLKHHGFDWIGF 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02264 865 SMART AAA_5 59 197 IPR003593 GO:0016887
Trre4g02264 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 290 IPR027417 -
Trre4g02264 865 SUPERFAMILY "Winged helix" DNA-binding domain 267 373 IPR036390 -
Trre4g02264 865 Gene3D Ribonuclease Inhibitor 374 640 IPR032675 -
Trre4g02264 865 Gene3D - 21 189 IPR027417 -
Trre4g02264 865 Gene3D - 196 280 IPR042197 -
Trre4g02264 865 Pfam NB-ARC domain 47 277 IPR002182 GO:0043531
Trre4g02264 865 PRINTS Disease resistance protein signature 537 553 - -
Trre4g02264 865 PRINTS Disease resistance protein signature 231 245 - -
Trre4g02264 865 PRINTS Disease resistance protein signature 62 77 - -
Trre4g02264 865 PRINTS Disease resistance protein signature 138 152 - -
Trre4g02264 865 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 639 IPR044974 GO:0006952
Trre4g02264 865 SUPERFAMILY L domain-like 352 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02264 Trre-Chr4 21297203 21300153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02264 10 632 WRKY Transcription Factor Family AT4G12020 34.472 1.06e-91 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02264 - - mtr:11441658 1283.09