Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02263 ATGGAGAATTACATGGTGAAGGAGGAAATAGTTGAGGTGATTGATGGAGAACAAGAGGAAGAAGAAAATGTTGGTGGTGATGAAGAAGATGATGTTGTTTCTACCTTGACAATGGAAAGGGTTGAAGCTGCTAAGAAATTCATTGAGAATCATTATAGGTCTCAAATGAAACACATTCAAGAACGTAAGGAAAGGCGCTCAGTTCTACAAAAGGCGTTAGAATCTGCGCATGTACCAGAAGAAGAGCAAATCAATTTACTAAAAGATTTAGAGAGCAAGGAGACCGAGTATATGCGGTTAAAAAGACATAAAATATGTGTCGATGATTTTGACCTTCTAACCATTATTGGCAGGGGAGCCTTTGGTGAGGTAAGACTCTGCCGCGAGAAGAAATCAGGTAATATCTATGCCATGAAAAAGTTGAAAAAGTCCGAAATGCTCAGCCGGGGACAGGTTGAGCATGTTAGAGCCGAGAGGAATGTACTTGCAGAAGTTGCCAATGACTGCATTGTGAAACTTTATTACTCATTTCAAGATCCTGAATTCTTATATCTTATAATGGAATATTTACCTGGTGGCGATATAATGACTTTGTTAATGAGGGAAGAAACTTTGACAGAAAGTGTGGCTAGATTTTACATTGCGCAAACCGTTTTGGCCATAGAGTCTATTCATAAACACAATTACATTCATCGGGATATAAAACCTGATAACCTTCTATTAGACATAAATGGTCATATGAAACTGTCGGATTTCGGTCTTTGCAAACCACTTGACTGCTCAAATCTATCATCTATAAATGAAAATGAAATATTGGATGATGACAACTTGAATGATACAATGGACGTTGACGGATCCTCAAACCCGAATAGCAAAAATGGTAGGCGTTGGAAAAGTCCGCTTGAACAACTTCAACATTGGCAAATGAATCGGAGGAAATTGGCATTTTCAACGGTTGGAACTCCAGACTATATTGCTCCGGAAGTGCTACTGAAAAAGGGTTATGGTGTCGAGTGCGATTGGTGGTCTCTTGGCGCTATAATATATGAGATGCTTGTCGGTTATCCTCCGTTTTACTCTGATGATCCTGTAACAACATGCAGAAAGATTGTGCACTGGAAAAATCACTTAAAATTTCCGGACGAGGCAAGATTGACACCTGAAGCAAAAGATCTGATATGCAGGTTGCTTAGTGGCGTTCCGCATCGACTCGGTACAAGAGGAGCAACTGAAATTAAATCTCATCCGTGGTTTAGAGATGTCATATGGGACAGGCTCTATGAAACCGAGGCAGCATTTAAACCACGAGTCATTGGGGAACTTGACACTCAAAATTTTATGAAATTCGACGAGGTTGAACCACCAAAGCCACCTTCTCGAACTGGATCTGGACCGATCAGAAAGATGCTCTTAACTCCTCAAGATCTCAGTTTTGTTGGCTATACATATAAGAATTTTGCCGCTGTCAAGGGGAAACGCCACTCTGTTGATAAGGGAAGTTTGTCACCACGATCATCAATCGACTCCACTCAAAGCGATTCTGCAATAAACTATTCCAACTGA 1563 0.4044 MENYMVKEEIVEVIDGEQEEEENVGGDEEDDVVSTLTMERVEAAKKFIENHYRSQMKHIQERKERRSVLQKALESAHVPEEEQINLLKDLESKETEYMRLKRHKICVDDFDLLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVANDCIVKLYYSFQDPEFLYLIMEYLPGGDIMTLLMREETLTESVARFYIAQTVLAIESIHKHNYIHRDIKPDNLLLDINGHMKLSDFGLCKPLDCSNLSSINENEILDDDNLNDTMDVDGSSNPNSKNGRRWKSPLEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIIYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEARLTPEAKDLICRLLSGVPHRLGTRGATEIKSHPWFRDVIWDRLYETEAAFKPRVIGELDTQNFMKFDEVEPPKPPSRTGSGPIRKMLLTPQDLSFVGYTYKNFAAVKGKRHSVDKGSLSPRSSIDSTQSDSAINYSN 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02263 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Trre4g02263 520 MobiDBLite consensus disorder prediction 491 520 - -
Trre4g02263 520 SMART serkin_6 110 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02263 520 FunFam Non-specific serine/threonine protein kinase 194 261 - -
Trre4g02263 520 Gene3D Phosphorylase Kinase; domain 1 437 447 - -
Trre4g02263 520 CDD MobB_NDR_LATS-like 44 105 - -
Trre4g02263 520 Gene3D Transferase(Phosphotransferase) domain 1 194 258 - -
Trre4g02263 520 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Trre4g02263 520 Gene3D Transferase(Phosphotransferase) domain 1 317 436 - -
Trre4g02263 520 CDD STKc_NDR_like 108 484 - -
Trre4g02263 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 468 - -
Trre4g02263 520 Pfam Protein kinase domain 310 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02263 520 Pfam Protein kinase domain 112 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02263 520 MobiDBLite consensus disorder prediction 500 520 - -
Trre4g02263 520 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 493 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre4g02263 520 FunFam Non-specific serine/threonine protein kinase 317 436 - -
Trre4g02263 520 ProSiteProfiles Protein kinase domain profile. 110 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02263 520 SMART pkinase_C_6 419 485 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre4g02263 520 Gene3D Phosphorylase Kinase; domain 1 108 193 - -
Trre4g02263 520 SUPERFAMILY Protein kinase-like (PK-like) 92 467 IPR011009 -
Trre4g02263 520 FunFam Non-specific serine/threonine protein kinase 71 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02263 Trre-Chr4 21287661 21292594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02263 28 503 AGC Kinase Gene Family AT2G19400 75.574 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Trre4g02263 Pkinase 7.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02263 K08790 - gmx:100802177 848.195