Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02250 ATGGGTCGTGCGAGTGGAAAAGTAACCATGAAACATATTCAAAATGAGAAAGTTCGGAAATCAGCTTTCATTCAGAGAAGTAAAAGATTAACAAAGAAAGTGTCAGAGTTTTCTGAAGACTTTGGAGTTGAAGCTTGCTTAATTGTGTACGATGGTGATGGTAAGCCAATGACTTGGCCACAAGACTCGAAAACTCTACAACCCATACTTACAATATATGAGCAACAAAAGATTGAGACGACTCCAAAGGAATTTAATGTGAAGGATTATTTTGCAAATAAGAAGAATATGGTTGAAGTTGAGATTTTGAGAGTGCGTAAAAAGATCATGATGAATAAATATCCAACTTGGAGTCTATGTTTCAATAACTTGGGAACGGAGCAACTGAAAGGTTTCATGGATATTGTAGATCTCAAGATTCAAGATTGTAATCAAAGAATCAACATGCTAAAAAATATGCAACAAAGTGATCAAATTAGTTTCATGCAAAACATTGCTCAGAGTCAGATGCAAAGTGTGGTTCCAGAGAATATTGCCGCGCCACAATCAAATTCAAATCAACTCGACGATCCTATGAATCCCCTTATTGATATTAGTGAGATGATAAATTTTACTGATCTTATAGAGTGGGATGATTTAATGCCTCAAAAGAATGTTTTCTCCTCAAATTCAAGTCAAGTTGAAGTCATGCATAGCATTCCTCAGTTGCAATATGTCACTGCTCCTTTGAAGCCACTTGATAATATTAGTTTGCCTCAAGTTTCATCAACAAGGCAATTTGGTGAATTTCAGAAGTTGGATGATTTAGTGAAAAAATCTGATCAAGAAAGTGCTGCTAAACTTGTAGATTTTAATGATTTGGCAGTTAATAAACTAAATGATGGTGATAGTTGGGTTAAGCAACCAGATGTGTTTGAAAGGAAAGATATTTCCTTTTTACCTGAAATTGAACAAGAATGTGCAACTTTGGATGCCTTTCATTCCCAACCAAGATTTGGATTTTAA 1005 0.3493 MGRASGKVTMKHIQNEKVRKSAFIQRSKRLTKKVSEFSEDFGVEACLIVYDGDGKPMTWPQDSKTLQPILTIYEQQKIETTPKEFNVKDYFANKKNMVEVEILRVRKKIMMNKYPTWSLCFNNLGTEQLKGFMDIVDLKIQDCNQRINMLKNMQQSDQISFMQNIAQSQMQSVVPENIAAPQSNSNQLDDPMNPLIDISEMINFTDLIEWDDLMPQKNVFSSNSSQVEVMHSIPQLQYVTAPLKPLDNISLPQVSSTRQFGEFQKLDDLVKKSDQESAAKLVDFNDLAVNKLNDGDSWVKQPDVFERKDISFLPEIEQECATLDAFHSQPRFGF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02250 334 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Trre4g02250 334 SUPERFAMILY SRF-like 6 77 IPR036879 GO:0003677|GO:0046983
Trre4g02250 334 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Trre4g02250 334 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 59 IPR002100 GO:0003677|GO:0046983
Trre4g02250 334 Gene3D - 15 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02250 Trre-Chr4 21103505 21104509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02250 1 146 Type I MADS-box Gene Family AT5G55690 33.987 1.56e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre4g02250 SRF-TF 6.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02250 - - tpra:123922586 426.402