Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02248 ATGGAACGTCGCGTTGGGAACAAGTTTCGTGTTGGTCGTAAGATCGGTAGTGGTTCCTTTGGAGAGATCTATTTAGGTACTAACATTCAAACTAATGAAGATGTTGCAATTAAGCTTGAAAATGTCAAGACAAAGAATCCTCAGTTGCTGTATGAGTCGAAGTTGTACAGAATACTGCAGGGAGAGCCTGGAATTCCAACTATTAAATGGTTTGGAGTGGAGGGAGATTACAATGTTCTAGTAATGGATCTGCTTGGACCTAGTCTCGAAGATATGTTTAACTTCTGTAATAGAAAGCTCTCGCTAAAAACGGTTCTCATGCTTGCTGAGCAAATGATCAAACGTGTTGAGTTTGTTCATTCTAAATCATTTCTTCATCGGGATATCAAACCAGATAATTTCCTCATGGGTGTGGGAAAACGGGAAAACCAGGTTTACTGTATTGATTTTGGTTTAGCGAAGAAATATAGAGATAGTTCAACCCATCAACACATTCCTTACAGAGAAAATAAGAATTTGACTGGAACTGCAAGATATGCCAGCATGAATACTCACCTTGGCATTGAACAAAGTCGAAGAGATGATTTAGAGTCTGTTGGTTATGTCTTGATGTACTTCCTGAGAGGAAGTCTCCCTTGGCAAGGACTTCAAGCACGAACCAAGAGAGAAAAGTATGAGAAAATCCGTGATAAGAAGGTTTCTACCTCGATTGAGGCCTTGTGTCGAGGTTATCCAACAGAATTTGCATCATATTTCCATTATTGCCGGTCATTGAGGTTTGATGATAGGCCAGATTATGCTTACCTCAAAAGAATATTTCGCGACCTGTTTATTCGTGAAGGATTTCAGTCTGATTACGTCTTTGATTGGACTATCTTGAAGTATGAGGAATCACAGCGAGTCACTCCTCCAGCACGTGCTATTGGGCCTGGTGCTGGAACTAGTTCTGGAATGCCTCTTGCTATGGCTAATGCTAATAGACACACAGGAAGGGAAGAAGGGCGTCTTCCTGGTTTGGCTTCAGTAGACAATTCAAGGCGAAGAATGTCGGGACCCATTTTAAATTCTTTATCAAGTGCCAGCAATGTCTTGGGTGAGTCAAGTGGGTCAAGGCGAGTTGCTGTTAGTAGTAGCCGCAATGCATTTATTGGTGCTGATTCGGATCTCCGTGTTCGTGCTACTGAATCTAACCGTGGAAAATCACACATAAATTCAACTGGACAAAGAAGTTCACAAATTGGATCTTCGGATCCAAACAGAGTAGCAGCATCTTCTAAACATGGTTCTTCTCATGTCAAGAATTATGAAAATGCAGTCAAGGGCATTGAGGGTTTGAAATTATAA 1344 0.4115 MERRVGNKFRVGRKIGSGSFGEIYLGTNIQTNEDVAIKLENVKTKNPQLLYESKLYRILQGEPGIPTIKWFGVEGDYNVLVMDLLGPSLEDMFNFCNRKLSLKTVLMLAEQMIKRVEFVHSKSFLHRDIKPDNFLMGVGKRENQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESVGYVLMYFLRGSLPWQGLQARTKREKYEKIRDKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQSDYVFDWTILKYEESQRVTPPARAIGPGAGTSSGMPLAMANANRHTGREEGRLPGLASVDNSRRRMSGPILNSLSSASNVLGESSGSRRVAVSSSRNAFIGADSDLRVRATESNRGKSHINSTGQRSSQIGSSDPNRVAASSKHGSSHVKNYENAVKGIEGLKL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02248 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre4g02248 447 CDD STKc_CK1_delta_epsilon 8 282 - -
Trre4g02248 447 MobiDBLite consensus disorder prediction 398 432 - -
Trre4g02248 447 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Trre4g02248 447 FunFam Putative Casein kinase I 1 85 - -
Trre4g02248 447 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02248 447 MobiDBLite consensus disorder prediction 395 435 - -
Trre4g02248 447 Pfam Protein kinase domain 10 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02248 447 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Trre4g02248 447 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02248 447 MobiDBLite consensus disorder prediction 326 353 - -
Trre4g02248 447 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre4g02248 447 FunFam Casein kinase I 1 307 - -
Trre4g02248 447 PANTHER CASEIN KINASE-RELATED 8 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02248 Trre-Chr4 21058934 21064541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02248 7 213 EF-hand Containing Proteins AT2G17890 24.074 1.80e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre4g02248 Pkinase 6.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02248 K02218 - gmx:100785851 741.11