Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02237 ATGTATTTGAGAACTCGATTCTCTGATTCAAACGAAATCAGCAACAGCAGTGGCATATGCTGCATAACTAACAATGCAGAAGCAAATTCAACTGTTACAGATAACACAATCACACCACTAAACCTTCTCTCAAACAATCTAGCTTCAATTCTAGATGTTGCAGACTTCGACTTCTTTTCCGATGCGAAGATCATCACCGGAGACCGTAGACAAGTTTCGGTGCACCGTTGTATTCTGTCAGCGAGGAGTAGTTTCTTTAAGAACATGTTTGGTGGAACAAAAGAGAAAATGAAAATGAGGATTGATTTGAAGGAAGTTGCTAACGATTATGATGTTGGGTTTGATGCAGTTAATGTTGTTCTGCGTTATTTGTATAGTGGGAAAGTTGAACAACCTTTGTCTACTAAAGGTGTTTGTGTTTGTGTTGATGATGATTGTTCTCATTTTGGATGTTGGCCTGTTGTTGATTTCATGCTTCAACTTCTTTATGCTTCATTCACTTTTGAAATATCTGAATTGATTGCTCTTTATCAGGATCATCTACTAGAAATTCTTGACAAGATTGCAATAGATGACATATTGGAGGTTCTTTCTGTATCAAATATATGTGGTAAATCATGTGATAAACTTCTAACAAGGTGCACAGAGATAATTGTTAATTCCAATGTTGATATCACTACTCTTGAAAAATCACTTCCTCAACCTATATCGAAACAAATAATGCGCAAACGAAACGAACTAGGCTTAAACATATCTGAAAACTTTAATCTTCTACACAAACATGTTAGCAGAATACATAGAGCTTTAGATTCAGATGATGTAGAATTAGTGAGGTTACTTTTGAAAGAAGGACACACTACTTTAGATGAGGCTCATGCACTTCACTATGCAGTTGCATATTGTGATGTGAAGACTACTACTGAGCTTCTTGATCTTGGACTTGCTGATGTAAATCATAAAAACAATAGGGGTTATAGCGTGTTACATGTCGCTGCGACAAGAAAAGAACCGAAGATTATTGTGTCTCTTTTAACAAAAGGAGCTCAGCCTTCTGAACTTACTTTGGATGGTAGAAAAGCTCTTCAGATTTCAAAGCGTTGTACGAAAGCTGTGAATTATTATAAATTTACGGAGGAAGGAAATATTTCGTCGAATGATCAATTGTGTATAGAGATATTGGAGCAAGCTGAGAGACGGGAGCCTTTACTTGGGGAAGCTTCTCTTTCTCTTGCTATGGCAGGAGATGATTTGCGTATGAAATTGTTGTACCTAGAAAATCGAGTTGGACTAGCAAAACTGTTGTTTCCAATGGAAGCAAAGGTTGTGTTGGATATTACTCAAATTGATGGCACATCTGAATTTACTCCAAACTTGGGTGGTTGCCAGAGGACAACTATGGACCTAAATGAGGCACCTTTCAAAATAAAAGAGGAGCATCTAATTAGGATGAAGGCACTGTCTAGATCAGTGGAGTTGGGGAAACGCTTCTTCCCTCGTTGCTCAGAAGTGTTGAACAAGATCATGGATGCCGATGAGCTATCGCAACTTGCGTGTATGAGTAATGACAGCCCCGAAGATCGACAAGCGAAGCGAAGACGGTACGTGGAGCTTCAAGAAGTTCTTAATAAAGTATTCCATGAAGACAAAGAGGAGTATGATAGATCTGCCATTTCTTCATCATCTTCATCCACATCAATAGGAATTGCAAGGCCTAATAATAGTAAGATAGCCATGAAGAATTAG 1743 0.381 MYLRTRFSDSNEISNSSGICCITNNAEANSTVTDNTITPLNLLSNNLASILDVADFDFFSDAKIITGDRRQVSVHRCILSARSSFFKNMFGGTKEKMKMRIDLKEVANDYDVGFDAVNVVLRYLYSGKVEQPLSTKGVCVCVDDDCSHFGCWPVVDFMLQLLYASFTFEISELIALYQDHLLEILDKIAIDDILEVLSVSNICGKSCDKLLTRCTEIIVNSNVDITTLEKSLPQPISKQIMRKRNELGLNISENFNLLHKHVSRIHRALDSDDVELVRLLLKEGHTTLDEAHALHYAVAYCDVKTTTELLDLGLADVNHKNNRGYSVLHVAATRKEPKIIVSLLTKGAQPSELTLDGRKALQISKRCTKAVNYYKFTEEGNISSNDQLCIEILEQAERREPLLGEASLSLAMAGDDLRMKLLYLENRVGLAKLLFPMEAKVVLDITQIDGTSEFTPNLGGCQRTTMDLNEAPFKIKEEHLIRMKALSRSVELGKRFFPRCSEVLNKIMDADELSQLACMSNDSPEDRQAKRRRYVELQEVLNKVFHEDKEEYDRSAISSSSSSTSIGIARPNNSKIAMKN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02237 580 Gene3D Potassium Channel Kv1.1; Chain A 24 219 IPR011333 -
Trre4g02237 580 Pfam Ankyrin repeats (3 copies) 266 350 IPR002110 GO:0005515
Trre4g02237 580 CDD BTB_POZ_NPR_plant 41 185 - -
Trre4g02237 580 SMART ANK_2a 323 352 IPR002110 GO:0005515
Trre4g02237 580 SMART ANK_2a 289 319 IPR002110 GO:0005515
Trre4g02237 580 SMART ANK_2a 260 288 IPR002110 GO:0005515
Trre4g02237 580 ProSiteProfiles BTB domain profile. 60 133 IPR000210 GO:0005515
Trre4g02237 580 PANTHER REGULATORY PROTEIN NPR3 5 566 IPR044292 GO:0009862|GO:2000022|GO:2000031
Trre4g02237 580 SMART BTB_4 60 185 IPR000210 GO:0005515
Trre4g02237 580 MobiDBLite consensus disorder prediction 556 571 - -
Trre4g02237 580 Pfam NPR1/NIM1 like defence protein C terminal 365 564 IPR021094 -
Trre4g02237 580 Pfam BTB/POZ domain 57 132 IPR000210 GO:0005515
Trre4g02237 580 ProSiteProfiles Ankyrin repeat profile. 323 355 IPR002110 GO:0005515
Trre4g02237 580 MobiDBLite consensus disorder prediction 552 580 - -
Trre4g02237 580 SUPERFAMILY POZ domain 52 182 IPR011333 -
Trre4g02237 580 Gene3D - 220 452 IPR036770 -
Trre4g02237 580 SUPERFAMILY Ankyrin repeat 260 366 IPR036770 -
Trre4g02237 580 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 234 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02237 Trre-Chr4 20938686 20941844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02237 218 345 Miscellaneous Gene Families AT2G01680 28.906 9.10e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre4g02237 NPR1_like_C 1.1e-81 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02237 K14508 - gmx:100800032 793.882