Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02235 ATGGATTCTCCAGAACCTTCTCTGAATGCCGGCGTTGAATCTCCTCAAGTTGAAGAATCTCCATTTTTGAGATTTGTCAACACTCTATCTCCAATAAAGCCTGTCAAGCCCTCTCATCATGTGACACATGATGGGTTTCTCCGACTCAATTCTCCGCCTCTTGTATTCAAGTCGCCGCGTATTAGTGATCACCGCCACCGCGAAAGGCCTCATTTGTCCAGTGGAGAAATACCTCAAAGTGCTGATTTGAAGAAATTGACTTCTCAGCCGTCATTGTCAGAGAATGATCTGAATAGTCCTCGACAATCTGTTGAGGAATATTTGGCTGATCCCATTCCCGGGGATGATCAGTTGTTGATCATTTCCTGCACACTTCCCCAGTGTGCAGGAAATGATCAACAACATCCTCAATTGATGCCTGATGATCCTATCCAGGAGGATGTTAAAGAATTCGAAAATTCCAATGAGATGATGGTGTCAACCTCACAAGAAGTAAATTCAGAGAGGAATATCCCACAAGAACAAGATGGCTCTGAGGCTAGTTTAAAGTATCACGGCGGCTTCCGTAGACGCTGCCTACAATTTGATGAAGCTGCTTCCATTGTTCTTGGAAGTAACAAGTCTCATGTGAAAATGAATGCAACTTCAAGCAACGTTACTGTGACAGGTTCCAAGCCACCAAGCATTGGGTTGCATTTAAATAGCATTGTAAATGCAATGCCACCTTCAGGTGTGATGAGATTATCAGATGGTTTTCAGGGCGGGATACAATCCAAACTTTCTATAAGTCTGCATAAAGTCGAAAGTGTGACAAAATCCGTCGACCTATATCCGGAAAATATACATGATAAGAAGAGAGTTAGCAGCCCTGCGATAGTTGAAAATACCGAGGAGGAATCAAACCATCGGAGCACCTCCAAGAAAAAGAAGAAAATAGGTGCTGATGATGATGCCAGTGGCTCTAAGAGTTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGGTGCTGGACTCTTCTGTGGCGACGATTGTGCTTGCGAAAGCTGTGGTAATAGAATAGAGTTTCAGGAGACAGTTGTTGAGACAAAGCATCATATCGAATCTCGTAATCCACAGGCATTTGCTCCCAAGATTGTACTGTGTGTGGCCGATGTTCCACCAAAAAATAATATGGAAGATGTGAATATTATGACAACACCGGCATCGGCGAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAAAGTGTACTAAAAAATATTGTGAATGTTTTCAGGCTAACGTTGGATGCTCGAGTGGATGTCGATGTGATGGATGTATGAATGCTTTTGGCAAGAGAGAAGATTTTGTGGCAATGGAACATGCTTCAAGCAAAGAGACGGAATGCAGCATTGCTGAATTGTTTCGACCAGCAAATCACCTCTCACCTGTAACACCATTGTTGGAATGCTCTGACCAAGGTATGCAGGCTGCAAAGTCCATAGTTGCTTCTGCTAGTTGGACTAAATCTTCCGAAAAATCACGGTGCAGTCTTGCACATTCGAAGTCGAATAATTCTCAAAAGAATGCACCTACAGGTCCTTCATCTAAAGATAATGAGTGGTTAGATCTCTCCAATAGATGCGGTATTCGCAAATTATCGGGGGGTTCTATTTGTTGGCGTGGTAGTTCACCAATTACCGCAAACGCTTCCAAAGATGATGAATTAGACGGCAAGCTATTTGACATTGTAGAAGATGAAACTCCCATCAAGTCTGTGAAAGCAAATTCTCCAATCCAAAAGAGAGTTTCTCCTCCACAGAATCATCTACTTGGGATTGGATCAAGCAGCTCCTCAGGTGGTTTGAAAAGTGGCAGGAAATTTATATTGCAATCTGTTCCTTCTTTTCCGCCGTTGACCCCTTGTGATGATTCCAAAGCTATTCGCACTTCAAATGAGGATTCGGGGAACAGCGCAGATCCGAAAAGCTAG 1986 0.4285 MDSPEPSLNAGVESPQVEESPFLRFVNTLSPIKPVKPSHHVTHDGFLRLNSPPLVFKSPRISDHRHRERPHLSSGEIPQSADLKKLTSQPSLSENDLNSPRQSVEEYLADPIPGDDQLLIISCTLPQCAGNDQQHPQLMPDDPIQEDVKEFENSNEMMVSTSQEVNSERNIPQEQDGSEASLKYHGGFRRRCLQFDEAASIVLGSNKSHVKMNATSSNVTVTGSKPPSIGLHLNSIVNAMPPSGVMRLSDGFQGGIQSKLSISLHKVESVTKSVDLYPENIHDKKRVSSPAIVENTEEESNHRSTSKKKKKIGADDDASGSKSCNCKKSKCLKLYCDCFGAGLFCGDDCACESCGNRIEFQETVVETKHHIESRNPQAFAPKIVLCVADVPPKNNMEDVNIMTTPASARHKRGCNCKRSKCTKKYCECFQANVGCSSGCRCDGCMNAFGKREDFVAMEHASSKETECSIAELFRPANHLSPVTPLLECSDQGMQAAKSIVASASWTKSSEKSRCSLAHSKSNNSQKNAPTGPSSKDNEWLDLSNRCGIRKLSGGSICWRGSSPITANASKDDELDGKLFDIVEDETPIKSVKANSPIQKRVSPPQNHLLGIGSSSSSGGLKSGRKFILQSVPSFPPLTPCDDSKAIRTSNEDSGNSADPKS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02235 661 MobiDBLite consensus disorder prediction 1 20 - -
Trre4g02235 661 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 322 357 IPR005172 -
Trre4g02235 661 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 412 447 IPR005172 -
Trre4g02235 661 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 143 IPR044522 GO:0003700
Trre4g02235 661 MobiDBLite consensus disorder prediction 594 661 - -
Trre4g02235 661 SMART CXC_2 409 450 IPR033467 -
Trre4g02235 661 SMART CXC_2 319 360 IPR033467 -
Trre4g02235 661 MobiDBLite consensus disorder prediction 516 538 - -
Trre4g02235 661 MobiDBLite consensus disorder prediction 287 324 - -
Trre4g02235 661 MobiDBLite consensus disorder prediction 46 101 - -
Trre4g02235 661 ProSiteProfiles CRC domain profile. 320 449 IPR005172 -
Trre4g02235 661 MobiDBLite consensus disorder prediction 59 73 - -
Trre4g02235 661 MobiDBLite consensus disorder prediction 80 101 - -
Trre4g02235 661 MobiDBLite consensus disorder prediction 594 623 - -
Trre4g02235 661 MobiDBLite consensus disorder prediction 287 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02235 Trre-Chr4 20926597 20928582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02235 184 639 CPP Transcription Factor Family AT3G22780 33.333 1.60e-57 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre4g02235 TCR 4.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02235 K21776 - gmx:547664 400.979