Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02222 ATGTACCATATGGAAGGTTTATTTGCCCTTCCTATAGCCGTCAGAACTGAATTTTTTCATTCTCTAATGCAATCTCTTGGAGGATGTTGTTACATTTGTCTTTGGGCATATAATACAATATTACCAAATCGTTTGTCCTTCTTGGATGGTTTCTACAATGTGGTAAACAACCAAATTCCAAGTTCTTCTTTGGGAAGTGTAGCACAACAGCTTTTTAATCAATACAGAATTTTATCATTTGATGTTAATGATGACCGCGTTCCTGGAATAGCTTTTAGGAATCGACGTCCATACCTCGAGCTGCAACAATTGGAACTTCTTGCACTATCTACAACAGAAATACAGACACAATTCTATCAAGAAGCAAGAATTAAGACTGCTGTTTTCATGGGGTGCAGCAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCTCAAGTTGATATTCAAACAACACTTGGTAGTTTATTTCCTGAAGATTTTTCAAGACAAACACAACAAATTATTGATCAAAATACTAATCCACCTTCATCATCTTCATCTTCAATGAGATCACCACTATCAACAGCAGGTAGTCCTGAATATTCATCTCTCATATTCAACAATATTCCATCTGGAACTTCTCCATCTCATTTTCCACCTGATCATACCCCCCTTGGAGGACCAATAATCCCTCCAATGAGACCTGTTTCAAACACACTACCCCTTCAACTCCAACAATTTCCTCAAATAACACCAACACAATTATTCTCTACACCAGAAATTAATCATCAAAATGATGCAATAATGAGAGCAATACAAAATGTTCTATCTACACCCCCCTGTCAACAAAACTTGCTTTATGGAGTTCATCCAGAATCTAGTGCATTTGGAAGGTATAGAAATGATAGAAGTCCTAATATAGGGTCAAATTTTAGAAGACAAAGTTTGATGAAGAGATCATTTTCATTCTTTAGAAACTTGAATTTGATGAGATTGAGAGATCGGAGTCAAGCGGCACGTCCTTCGAGTAATCAACTTCATCATATGATATCCGAGCGACGCAGGCGCGAGAAGCTTAATGAGAATTTTCAAGCACTTAGAGCATTGCTTCCTCAAGGAACTAAGAAAGACAAAGCATCAATACTAATAACAGCAAAGGAGACATTAAGGTCATTGATGGCTGAAATTGACAAACTCAACAAAAGAAATAATGAGTTGATGTCACAACAATTGCCACCAGCCAATAAAGAATCAACAACAAAAACAAAAGAAATTATCAAATTATCAACAAACGAAAGATTAAACGTGCAAATTTCACATTTACCAGAATTAAGTTCATCAGAAGACGAGCCAATGGTAGTAGATTTGCAAGTGAATGTGATGGGACAAATTTCTCAAGTTGATATGTTGATTAGATTATTGGAATTCTTAAATCAAATTCAACATGTTAACTTGATTTCAATGGATGCAACAAATACAAATAATTCACAAGGGGATAATTCCATTCATCAAATTACATTCAGGCTAAGGATTACTCAGGACTGTGAATGGGACGAGGAAGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGATGCATTCCCAAGTGGACTAA 1602 0.3627 MYHMEGLFALPIAVRTEFFHSLMQSLGGCCYICLWAYNTILPNRLSFLDGFYNVVNNQIPSSSLGSVAQQLFNQYRILSFDVNDDRVPGIAFRNRRPYLELQQLELLALSTTEIQTQFYQEARIKTAVFMGCSKGEIELGFLNMSQVDIQTTLGSLFPEDFSRQTQQIIDQNTNPPSSSSSSMRSPLSTAGSPEYSSLIFNNIPSGTSPSHFPPDHTPLGGPIIPPMRPVSNTLPLQLQQFPQITPTQLFSTPEINHQNDAIMRAIQNVLSTPPCQQNLLYGVHPESSAFGRYRNDRSPNIGSNFRRQSLMKRSFSFFRNLNLMRLRDRSQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKKDKASILITAKETLRSLMAEIDKLNKRNNELMSQQLPPANKESTTKTKEIIKLSTNERLNVQISHLPELSSSEDEPMVVDLQVNVMGQISQVDMLIRLLEFLNQIQHVNLISMDATNTNNSQGDNSIHQITFRLRITQDCEWDEEAFQEAVRRVVADLMHSQVD 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02222 533 Coils Coil 376 403 - -
Trre4g02222 533 CDD bHLH_AtbHLH_like 342 393 IPR045239 -
Trre4g02222 533 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 112 526 IPR044658 -
Trre4g02222 533 Coils Coil 343 363 - -
Trre4g02222 533 Pfam Helix-loop-helix DNA-binding domain 341 386 IPR011598 GO:0046983
Trre4g02222 533 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 406 IPR036638 GO:0046983
Trre4g02222 533 SMART finulus 343 392 IPR011598 GO:0046983
Trre4g02222 533 MobiDBLite consensus disorder prediction 170 192 - -
Trre4g02222 533 Gene3D - 336 406 IPR036638 GO:0046983
Trre4g02222 533 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 386 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02222 Trre-Chr4 20725241 20732468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02222 14 529 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.083 7.75e-94 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre4g02222 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02222 - - gmx:100807098 589.726