Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02201 ATGGACTTGTCAAGAAACGTGGTTGCTGCTCAACAGGAAGACTCTAAGAAACGAAAAAGAGCAGGCAGACGTCATTCTCCCATTCAAACAAGTAGATTGGAAGAAATATTCACGACACTCGAACACCCGACCGAGATCCAAAGAAGTGAGATAGCCAAAGAGCTTGGACTTCAACCAAGACAAGTTCAGTTTTGGTTTCAAAATCGAAGGACTCAAAAAAAGTCTCAAAATGAGAAAGCAACTAGCAATGAACTTCGTGCTGAATATAACAGACTTCACAATGAGAACATCCAGATGAAGGAGCAATTGAAAAGTATTGTTTGCATTACATGTGGCCGTGGATTTTGTAAGAATCATGAGATGGAACAACTTCAGCTTGAAAATGCTCGTCTCAAAGAAGAGGTAAGTTAA 411 0.399 MDLSRNVVAAQQEDSKKRKRAGRRHSPIQTSRLEEIFTTLEHPTEIQRSEIAKELGLQPRQVQFWFQNRRTQKKSQNEKATSNELRAEYNRLHNENIQMKEQLKSIVCITCGRGFCKNHEMEQLQLENARLKEEVS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02201 136 SMART HOX_1 18 80 IPR001356 GO:0003677
Trre4g02201 136 Coils Coil 68 102 - -
Trre4g02201 136 SUPERFAMILY Homeodomain-like 13 79 IPR009057 -
Trre4g02201 136 Coils Coil 121 136 - -
Trre4g02201 136 Gene3D - 4 88 - -
Trre4g02201 136 PRINTS Lambda-repressor HTH signature 47 56 IPR000047 GO:0003677
Trre4g02201 136 PRINTS Lambda-repressor HTH signature 56 72 IPR000047 GO:0003677
Trre4g02201 136 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 135 IPR042160 -
Trre4g02201 136 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
Trre4g02201 136 MobiDBLite consensus disorder prediction 1 29 - -
Trre4g02201 136 Pfam Homeodomain 23 74 IPR001356 GO:0003677
Trre4g02201 136 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Trre4g02201 136 CDD homeodomain 19 77 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02201 Trre-Chr4 20351866 20353420 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02201 24 135 Homeobox Transcription Factor Family AT1G17920 43.478 1.86e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre4g02201 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02201 K09338 - egt:105965116 126.716