Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02198 ATGGACTTGTCAAGAAACATGGCCGATGCTCAACAAGACCGTAACAAATCAAAAAGAGCAAGCAAACGCCATTCTCCCATTCAAACAAGTAGACTGGAAGAAATATTCATGACAGTTGAACATCCGACTGCGGACCAAAGATCTGACATTGCAAAAGAGATCGGACTTCAAGAAAGCCAGGTGAAGTTATGGTTTCAAAACAGACGGACACAAAAAAAGTCTAAAACGGAGAAAACTGTTCACAATGACCTTCGTGCTGAAAATGAAAGACTGAACAATGAGAACATCCAGATGAAGGAACAATTGAAGAATATTCTTTGCACAACATGTGGACGTCGATTTTGTAAGAAGCATTCGGTGGAACAACTTCTGCTTGAAAATGCTCGTCTCAGAGAAGAGGTGAGTTAA 408 0.4044 MDLSRNMADAQQDRNKSKRASKRHSPIQTSRLEEIFMTVEHPTADQRSDIAKEIGLQESQVKLWFQNRRTQKKSKTEKTVHNDLRAENERLNNENIQMKEQLKNILCTTCGRRFCKKHSVEQLLLENARLREEVS 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02198 135 Coils Coil 74 108 - -
Trre4g02198 135 SMART HOX_1 17 79 IPR001356 GO:0003677
Trre4g02198 135 CDD homeodomain 18 75 IPR001356 GO:0003677
Trre4g02198 135 PRINTS Lambda-repressor HTH signature 55 71 IPR000047 GO:0003677
Trre4g02198 135 PRINTS Lambda-repressor HTH signature 46 55 IPR000047 GO:0003677
Trre4g02198 135 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 134 IPR042160 -
Trre4g02198 135 Pfam Homeodomain 22 73 IPR001356 GO:0003677
Trre4g02198 135 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Trre4g02198 135 ProSitePatterns 'Homeobox' domain signature. 50 73 IPR017970 GO:0000981|GO:0006355
Trre4g02198 135 MobiDBLite consensus disorder prediction 1 30 - -
Trre4g02198 135 SUPERFAMILY Homeodomain-like 12 79 IPR009057 -
Trre4g02198 135 Gene3D - 4 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02198 Trre-Chr4 20307705 20309453 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02198 15 134 Homeobox Transcription Factor Family AT1G05230 43.089 2.33e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre4g02198 Homeodomain 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02198 K09338 - twl:119995606 115.161