Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02192 ATGGGGGTGGTTTTGCATATTATTATGCTGCTTTTTGTTATTGGTTTTGTTGTTGCAGCTCAAGGATCTGAAGGGTCTATTATATCCCCATCTCCGGCATTTCTTCCTGCTGTTCAGCCTAATGGAGAAGCACCTGATGGTCTTATCCATAATGGACAGACATCGAGAAGCAGTGCATCAAGCCCTTCAGATCCAGATGGGTCTGTCATATCGCCATCTCCATCAACATTACCTACGGATCCTTCCCCGAGTAAAGCGCCAAGTCTATTACATCCAAATGGATCTTTCTTGCAACTTCCAGTTGCATTACCACCTTCTACATCAGGTCCAACTCCTCAGAAGATTAAAGGAATTGAATCATCCATATCGCCCAGTCCTAGTCCAAACACCAAATCCTTATCGCCGCCACCGTATAAGTCTGTTTTGGCACCATCAACTGCTGAAATGAATTTTCCACCATCCCTGCAACCAATTCCACCTCAAAGGAAAACACCCATTGTTAGGCCTCCTATATCAACACCAACTGCTTCAGCTCCTGTTGCAATACCTCCTGGAAATTTTCCTAAAACTTCACCTATCAGCCAACCAATTAAACATGGAAGTGTGCCTCCTGAGGTTGATAAGAGGAATGAAAGTAAGAGTCACAACCTACAGCCAGTTTCACCAGGTTTTTTGTTGCACCCTCCAGTTGCATTACCACCTCCTACATCAGCTCCAATTCCTCAGAAGATTAAAGGAAATGAATCATCCGTATCACCTAGTCCAAGCACCATATCGTTATCGCCACCATATAAGGCTGTTCCAGAGCCATCAACTGTTGAAAGGAATTTTCCACCATCCGTGCAACCAATTCCACCTCAAAAGACAATACCTATTGTTACGCCTCCTATATCCACACCAACTGCTCCAGCTCCTGTTGCAATAACTCCTGGAAATGTGCCTAAAACTTCTCCTATCAGCCAACCAATTGAACATGGAAATTTGCCTCCTAACGTTGATAGGAGGAATGAAAGTAAGAGTCATAACCTAGAGCCAGTTTCACCAGGGTCTTTCTTGCACACTCCAGTTGCATTGCCACCTCCTACTTCAGCTCCAATTCCTCAGAAGATTAAAGGAAATGAATCATCCATATCACCTAGTCCTAGTCCAAGCACCAAATCGTTATCGCCGCCATATAAGGCTGTTCCAGAGCCATCAACTGCTGAAAGGAATTTCCCACCATCTATGCAACCAATTCCACCTCAAAAGGAAATACCTATTGTTAGGCCTCCTATATCCACACCAACTGCTCCAGCTCCTGTTGCAATACCTCCTGGAAATTTTCCTAAAACTTCACCTATCAGCCAACCAATTAAACATGGAAGTGTGCCTCCTGAGGTTGATAAGAGGAATGAAAGTAAGAGTCACAACCTACAGCCAGTTTCACCAGGTTTTTTGTTGCACCCTCCAGTTGCATTACCACCTCCTACATCAGCTCCAATTCCTCAGAAGATTAAAGGAAATGAATCATCCGTATCACCTAGTCCAAGCACCATATCGTTATCGCCACCATATAAGGCTGTTCCAGAGCCATCAACTGTTGAAAGGAATTTTCCACCATCCGTGCAACCAATTCCACCTCAAAAGACAATACCTATTGTTACGCCTCCTATATCCACACCAACTGCTCCAGCTCCTGTTGCAATAACTCCTGGAAATGTGCCTAAAACTTCTCCTATCAGCCAACCAATTGAACATGGAAATTTGCCTCCTAACGTTGATAGGAGGAATGAAAGTAAGAGTCATAACCTAGAGCCAGTTTCACCAGGGTCTTTCTTGCACACTCCAGTTGCATTGCCACCTCCTACTTCAGCTCCAATTCCTCAGAAGATTAAAGGAAATGAATCATCCATATCACCTAGTCCTAGTCCAAGCACCAAATCGTTATCGCCGCCATATAAGGCTGTTCCAGAGCCATCAACTGCTGAAAGGAATTTCCCACCATCTATGCAACCAATTCCACCTCAAAAGGAAATACCTATTGTTAGGCCTCCTATATCCACACCAACTGCTCCAGCTCCTGTTGCAATACCTCCTGGAAATTTTCCTAAAACTTCACCTATCAGCCAACCAATTAAACATGGAAGTGTGCCTCCTGAGGTTGATAAGAGGAATGAAAGTAAGAGTCACAACCTACAGCCAGTTTCACCAGGTTTTTTGTTGCACCCTCCAGTTGCATTACCACCTCCTACATCAGCTCCAATTCCTCAGAAGATTAAAGGAAATGAATCATCCGTATCACCTAGTCCAAGCACCATATCGTTATCGCCACCATATAAGGCTGTTCCAGAGCCATCAACTGTTGAAAGGAATTTTCCACCATCCGTGCAACCAATTCCACCTCAAAAGACAATACCTATTGTTACGCCTCCTATATCCACACCAACTGCTCCAGCTCCTGTTGCAATAACTCCTGGAAATGTGCCTAAAACTTCTCCTATCAGCCAACCAATTGAACATGGAAATTTGCCTCCTAACGTTGATAGGAGGAATGAAAGTAAGAGTCATAACCTAGAGCCAGTTTCACCAGGGTCTTTCTTGCACACTCCAGTTGCATTGCCACCTCCTACTTCAGCTCCAATTCCTCAGAAGATTAAAGGAAATGAATCATCCATATCACCTAGTCCTAGTCCAAGCACCAAATCGTTATCGCCGCCATATAAGGCTGTTCCAGAGCCATCAACTGCTGAAAGGAATTTCCCACCATCTATGCAACCAATTCCACCTCAAAAGGAAATACCTATTGTTAGGCCTCCTATATCCACACCAACTGCTCCAGCTCCTCTAACAATACCTCCTGGAAATTTGCCTAGAACTTCTCCTATCAGCCAACCAATTGAACATGGAAGTTTGCCTCCTAAGGTTGGTAGGAGGAATGAAAGTCGGAATCACAACCTAGAGCCACTTTCACCAGCCCCAGTTGCAACACCTTCTACCAATGAGCCCAAAATTTCACCAATAAGCCATTCAACTAATAATGGAAGTTTGCCGCCTAATGCTCATAGTAATGGTACAAATACAAATAAACCTCACCTCCCAGAGCCAATTTCACCAGCCCCTGCATTGAATTTGCCAAAATATTCGCCAGTGAGTCAGCCAACTGAACCTGGAAGTTTGCCTCCTACTGTCCATAGAAGGAATTCCAGTATCAGGCACACACTGGAGCCCGTTTCACAAGCCCCGGTTGCAGAACCTCCTAAAAAATTTCCAAAAAATTCACCAGTCAACCAACCAACTCGTCTTGGAAGTTTTCCACCTAATGTTCATAATAGAACTGTACATAAGGGACACACTCCAGAGCCAGTAATGCCACCACCAAGTACATTTCCAGCAGATCCGCCATTGGCCCACCCAGTCAATACAGCAGCATCTCCACATGAATTACCAGCACCTGCCATCTCTCCCTCATTAACACCTTCAAGAAGATTCAATGGGAAAAACGGTGGAGAACCTGTTTCTGCGCCCTTGTACAAAACACCAAAGTCACCACCAGCTATAGTTCATTCCCCTGCTCAAGCTCCTTCTGTACATAAAGCAAGGCCATTACACCATGCTCCTGAGCCATTGATTTCACCTCCTAAATCTCCTTTCAACAAAGATCATTCTCCTGCATCTTCACCTTCTACAGCATTTTATAAGCATCACCATACAAGGAACACGATAACCAACCCAGCTCCTGCATCATCATATATTGTTTCTCCTCCCACTTCAAAGCACCAAGGTTCTGCAGACTCTCCATTTACCTTTCCTATTCAATCACCAGCGAGCCAGGTTTCGCCTGCTCCTTCTCCATCATTCGTGACTTTCCCTCACTCCACCAAAATTCCATTTCATCCTCCTGAAGAATCTCCTTTGCGGCCTTTTTTGAGGAACCCTAAGAAGCCAATCCAAGCATTACCACCTCCACCTCCCAATGAAGATTGTTTATCATTTATTTGCTCGGAGCCTTTAACAAATTCACCACCCGGGGTGCCCTGCATGTGTGTCTGGCCAATGAGAGTAGGCCTTCGCCTCAGTGTTCCTCTGTATACCTTCTTCCCTTTAGTTTCAGAGCTTGCTTCTGAAATAGCCACCGGAGTTTTCATGAAACCAAGTCAAGTTCGTATTATGGGGGCCAATACAGCAACTGACCTGCCAGATAAAACTGATGCCCTCATTGATTTGGTACCGCTTGTGGAAGAATTTGACAACACTACAGCCTTTATAGCTTCTGAGAGGTTTTGGCATAAACAAGTTGCTATAAAAAATTCTTACTTTGGAGATTATGAAGTGTTATATGTAAGCTATCCAGGTTTACCTCCATCTCCTCCATTACCACCTTCAAGTGTTAACATGATAGATGGTGGTCCTTATTCAAATAATGGCAATAATGGTAGGACAATAAAGCCTCTTGGGGTTGACATACAGAAGAAGCAGCATAAAAGTGGACTTAGCAAGGGCATTATAGCTATTATTGCTCTTTCGGCTTTTCTAGCAATTGTTTTATGCTCTGCTGCTGTTTTTGCCTTATCCAAATTCAGAGGTCGTGTGCCTGAGTCTCAACCAACATCAACCCCACGGGCTTTTCCTCCGTCTCTTGTCAAAGCACCAGGTACTGCTGGACCATCAGTTGCTTCAGCTTCAACATCATTTCGATCTAGCATTGCTGCATATGCAGGATCTGCCAAGACTTTCAGTATGAACGAAATAGAAAAAGCAACTGATAATTTCCACCCTTCTAGAATACTTGGAGAAGGAGGTTTTGGGCTTGTTTATAGCGGTAACCTTGAAGATGGGTCAAAAGTAGCATTCAAAGTTCTAAAGAGGGAGGATCATCACGGCGATCGTGAATTCTTATCTGAAGTTGAGATGCTTAGTCGCCTTCACCATAGAAATTTGGTAAAGTTGATCGGTATATGTACAGAACTCAGCTTCCGCTGTCTGGTTTATGAACTCATTCCAAATGGAAGTGTGGAATCCCATTTACATGGAGTTGATAGGGAAAAAAGCCCACTTGATTGGAGTACTCGGATAAAGATAGCACTTGGTGCTGCTCGTGGTCTCGCTTATCTGCATGAAGATTCAAGTCCACATGTCATACATAGGGACTTCAAATCGAGCAATATCTTACTGGAAAATGATTTTACCCCAAAAGTTTCTGATTTTGGATTGGCTCGAACGGCAGCTGATGAGGATAATAGGCACATATCGACACGTGTCATGGGAACTTTCGGTTATGTTGCTCCTGAGTACGCAATGACTGGACATCTTCTCGTGAAAAGTGATGTATACAGCTACGGTGTTGTTCTTCTTGAGCTTTTGACAGGAAGAAAACCTGTGGATTTTTCACAACCGCCTGGTCAAGAGAATCTCGTTGCATGGGCTCGTCCTCTCCTAACAAGTAGAGAAGGACTGGAAGCGTTAATCGACCCATCTCTAGGAACCAATATCCCTTTTGATAGTGTGGCTAAAGTTGCAGCCATTGCTTCAATGTGTGTACAACCAGAGGTTTCGGACCGTCCTTTCATGGGTGAGGTTGTTCAGGCTTTGAAACTTGTTTGTAATGAATGTGATGAAGCAAAAGAAGCAGGTTCAACAAATTCAAGCCAGGAAGAGTTATCTTCTGATTTCATTACTGCTTCTGAACAACAACCAGATAGTTTCCGAGGCCATTTCGCAGCTGCTAATTACGATTACGGAGTTGATATCGAAAATGGATTGGCAGCATCAGAGTTATTCAGCTCATCAGCAAGATTTGGAAGACAAGTATCTGGATCATTTAGAAGACATTCATATTCAGGTCCTCTAAGAACAGGAAGAAGCAAGCAGTTATGGCAGATAATTCGAAACCTTTCTGGCGGTAGTGTAAGTGAACACGGAGTTATGTTCAAGTAA 5913 0.4385 MGVVLHIIMLLFVIGFVVAAQGSEGSIISPSPAFLPAVQPNGEAPDGLIHNGQTSRSSASSPSDPDGSVISPSPSTLPTDPSPSKAPSLLHPNGSFLQLPVALPPSTSGPTPQKIKGIESSISPSPSPNTKSLSPPPYKSVLAPSTAEMNFPPSLQPIPPQRKTPIVRPPISTPTASAPVAIPPGNFPKTSPISQPIKHGSVPPEVDKRNESKSHNLQPVSPGFLLHPPVALPPPTSAPIPQKIKGNESSVSPSPSTISLSPPYKAVPEPSTVERNFPPSVQPIPPQKTIPIVTPPISTPTAPAPVAITPGNVPKTSPISQPIEHGNLPPNVDRRNESKSHNLEPVSPGSFLHTPVALPPPTSAPIPQKIKGNESSISPSPSPSTKSLSPPYKAVPEPSTAERNFPPSMQPIPPQKEIPIVRPPISTPTAPAPVAIPPGNFPKTSPISQPIKHGSVPPEVDKRNESKSHNLQPVSPGFLLHPPVALPPPTSAPIPQKIKGNESSVSPSPSTISLSPPYKAVPEPSTVERNFPPSVQPIPPQKTIPIVTPPISTPTAPAPVAITPGNVPKTSPISQPIEHGNLPPNVDRRNESKSHNLEPVSPGSFLHTPVALPPPTSAPIPQKIKGNESSISPSPSPSTKSLSPPYKAVPEPSTAERNFPPSMQPIPPQKEIPIVRPPISTPTAPAPVAIPPGNFPKTSPISQPIKHGSVPPEVDKRNESKSHNLQPVSPGFLLHPPVALPPPTSAPIPQKIKGNESSVSPSPSTISLSPPYKAVPEPSTVERNFPPSVQPIPPQKTIPIVTPPISTPTAPAPVAITPGNVPKTSPISQPIEHGNLPPNVDRRNESKSHNLEPVSPGSFLHTPVALPPPTSAPIPQKIKGNESSISPSPSPSTKSLSPPYKAVPEPSTAERNFPPSMQPIPPQKEIPIVRPPISTPTAPAPLTIPPGNLPRTSPISQPIEHGSLPPKVGRRNESRNHNLEPLSPAPVATPSTNEPKISPISHSTNNGSLPPNAHSNGTNTNKPHLPEPISPAPALNLPKYSPVSQPTEPGSLPPTVHRRNSSIRHTLEPVSQAPVAEPPKKFPKNSPVNQPTRLGSFPPNVHNRTVHKGHTPEPVMPPPSTFPADPPLAHPVNTAASPHELPAPAISPSLTPSRRFNGKNGGEPVSAPLYKTPKSPPAIVHSPAQAPSVHKARPLHHAPEPLISPPKSPFNKDHSPASSPSTAFYKHHHTRNTITNPAPASSYIVSPPTSKHQGSADSPFTFPIQSPASQVSPAPSPSFVTFPHSTKIPFHPPEESPLRPFLRNPKKPIQALPPPPPNEDCLSFICSEPLTNSPPGVPCMCVWPMRVGLRLSVPLYTFFPLVSELASEIATGVFMKPSQVRIMGANTATDLPDKTDALIDLVPLVEEFDNTTAFIASERFWHKQVAIKNSYFGDYEVLYVSYPGLPPSPPLPPSSVNMIDGGPYSNNGNNGRTIKPLGVDIQKKQHKSGLSKGIIAIIALSAFLAIVLCSAAVFALSKFRGRVPESQPTSTPRAFPPSLVKAPGTAGPSVASASTSFRSSIAAYAGSAKTFSMNEIEKATDNFHPSRILGEGGFGLVYSGNLEDGSKVAFKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICTELSFRCLVYELIPNGSVESHLHGVDREKSPLDWSTRIKIALGAARGLAYLHEDSSPHVIHRDFKSSNILLENDFTPKVSDFGLARTAADEDNRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDFSQPPGQENLVAWARPLLTSREGLEALIDPSLGTNIPFDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEAKEAGSTNSSQEELSSDFITASEQQPDSFRGHFAAANYDYGVDIENGLAASELFSSSARFGRQVSGSFRRHSYSGPLRTGRSKQLWQIIRNLSGGSVSEHGVMFK 1970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02192 1970 FunFam receptor-like serine/threonine-protein kinase ALE2 1556 1658 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 697 723 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 188 221 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 407 444 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 1040 1068 - -
Trre4g02192 1970 PANTHER OS01G0750732 PROTEIN 1313 1882 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 876 897 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 496 515 - -
Trre4g02192 1970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1705 1717 IPR008271 GO:0004672|GO:0006468
Trre4g02192 1970 Gene3D Phosphorylase Kinase; domain 1 1555 1658 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 100 128 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 915 952 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 38 145 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 236 263 - -
Trre4g02192 1970 CDD STKc_IRAK 1589 1857 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 622 643 - -
Trre4g02192 1970 ProSitePatterns Protein kinases ATP-binding region signature. 1589 1611 IPR017441 GO:0005524
Trre4g02192 1970 MobiDBLite consensus disorder prediction 752 771 - -
Trre4g02192 1970 SUPERFAMILY Protein kinase-like (PK-like) 1564 1856 IPR011009 -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 1211 1278 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 305 540 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 242 261 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 1112 1126 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 368 389 - -
Trre4g02192 1970 FunFam Receptor-like serine/threonine-protein kinase ALE2 1659 1878 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 809 1278 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 985 1025 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 480 494 - -
Trre4g02192 1970 Pfam Protein tyrosine and serine/threonine kinase 1586 1856 IPR001245 GO:0004672|GO:0006468
Trre4g02192 1970 ProSiteProfiles Protein kinase domain profile. 1583 1859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02192 1970 MobiDBLite consensus disorder prediction 752 769 - -
Trre4g02192 1970 Gene3D Transferase(Phosphotransferase) domain 1 1659 1882 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 48 75 - -
Trre4g02192 1970 MobiDBLite consensus disorder prediction 555 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02192 Trre-Chr4 20218714 20234132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02192 1125 1970 Receptor kinase-like Gene Family AT5G56890 55.061 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trre4g02192 PK_Tyr_Ser-Thr 8.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02192 - - psat:127136544 1998.4