Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02180 ATGAAAGCGATGTTTGTTTCTGCTGTCTATCTTCAAGTCAGTACAATTAGTCAAGCCTTAATCTTTGTGACACGGTCCAGGGGTTGGTCCTACACAGAAAGACCTGGTCTTTTGCTTGTTTTTGCCTTTGTTATTGCTCAGCTGGTTGCAACTTTTATATCAGCATATGCCAATTGGGAAATTGCTGGAATCAGAGCCATAGGTTTGGGCTGGGCAGCAGTCATTTGGTTGTTCAACATTGTAACTTATGTTTTTCTTGATCCTTTAAACGGAAGGGCTTGGAATCTGGTGGTAAACCAAAGAACTGCATTCACCAACAAAAATGATTTTGGTAAAGAATCCCGTGAGGCTGCATGGGCTGCTGAGCAGAGAACCTTGCATGGTCTTCGCTCTGCTGAGTCTAAAGGGTTTGTAGAGAAGCACAACCATAGGGAAATAAATACAATGGCAGACGAGGCTAAGAGGCGAGCAGAGTTAGCAAGGTTGAGAGCGCTTCACACTCTGAAAGGAAGAGTGGAATCTTTTGCCAGGCTAAGGGGTTTGGATGTTGAGACCATGAATGGGCACTACACTGTCTAA 579 0.4421 MKAMFVSAVYLQVSTISQALIFVTRSRGWSYTERPGLLLVFAFVIAQLVATFISAYANWEIAGIRAIGLGWAAVIWLFNIVTYVFLDPLNGRAWNLVVNQRTAFTNKNDFGKESREAAWAAEQRTLHGLRSAESKGFVEKHNHREINTMADEAKRRAELARLRALHTLKGRVESFARLRGLDVETMNGHYTV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02180 192 Gene3D - 141 192 - -
Trre4g02180 192 SUPERFAMILY Calcium ATPase, transmembrane domain M 6 86 IPR023298 -
Trre4g02180 192 Gene3D - 1 91 - -
Trre4g02180 192 PANTHER CALCIUM-TRANSPORTING ATPASE 6 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02180 Trre-Chr4 20040732 20041802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02180 7 192 Primary Pumps ATPases AT5G62670 63.402 1.50e-79 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02180 K01535 - gmx:100794938 300.441