Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02179 ATGTCTTTTGATCTTAATAATGAATTAGATCACAATCACCACCATCTCTTTAATTCAAATATTCATCAACCCTCTTCTTCATATTCCATACTCTTTAACCAAAATCAAGATCAAGGTAGATCTTATTCTTTGGAATCAAACCACATACAAAGTGGTCATCATTTAGAGGTTGAGAAGTTTGTTTCTTCTAATGGATCATGGGATTATCAAGAAATGAAGAAAGAAGATGGAAGTGAAGATTATAAAGCTGAGGATAGTACTTCATTGAAATGGATGCCATCAAAGAAGAGAATTATTCATAAAATGATGGAAGATCAAAGGAGTTCTAAGCACAAGTTTGAAAAAGAAAAGCTATTAGGATTTGATAAAAGTAGCAACAACAATTCTTCAAACAACAACATCACTATTAGGGTTTGCAGTGATTGCCACACAACTAAGACCCCTCTCTGGAGAAGTGGACCAACAGGTCCTAAGGAAAGCACGACGCGCCCTTGCAGCGGCAGCATCTGA 510 0.3608 MSFDLNNELDHNHHHLFNSNIHQPSSSYSILFNQNQDQGRSYSLESNHIQSGHHLEVEKFVSSNGSWDYQEMKKEDGSEDYKAEDSTSLKWMPSKKRIIHKMMEDQRSSKHKFEKEKLLGFDKSSNNNSSNNNITIRVCSDCHTTKTPLWRSGPTGPKESTTRPCSGSI 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02179 169 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 157 - -
Trre4g02179 169 Gene3D - 135 166 IPR013088 GO:0006355|GO:0008270
Trre4g02179 169 ProSiteProfiles GATA-type zinc finger domain profile. 137 156 IPR000679 GO:0006355|GO:0043565
Trre4g02179 169 Pfam GATA zinc finger 139 158 IPR000679 GO:0006355|GO:0043565
Trre4g02179 169 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 11 158 - -
Trre4g02179 169 SMART GATA_3 133 168 IPR000679 GO:0006355|GO:0043565
Trre4g02179 169 MobiDBLite consensus disorder prediction 146 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02179 Trre-Chr4 19959311 19960861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02179 88 158 C2C2-Gata Transcription Factor Family AT4G26150 47.297 6.36e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre4g02179 GATA 1.6e-07 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02179 - - psat:127136613 205.682