Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02170 ATGGATGATGATCATCACAAATCTTTCACGTTGGATCTTAATCTTGGACTTGGATTAGGATCTTATGTGCAAGAGAATGTGAACAAATCATTGGCTAGTTCAAAAGATGAATTAACCATTGGTTTGAATCATCATGATAAGGGAAATGAATTGAGTTTGAAAAGAGTGCATGAAGAACAAGAAGCACACACAATTGATGAAGAAATTGCTATTGACACCACCAATGATAATAACGGGTGTACAAAGAAATTGAGGCTTACTAAGGAGCAATCAACCATGCTTGAGGATGCCTTCAAGCTTCATAACACCATTAACACCGCTCAAAAACGGGCACTTGCTGAGAAATTGAATTTAAAGCAAAGACAGGTTGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACTAAGCTGAAACAAACAGAGGTAAACTACATGTTCTTGAAGAAATGTCATGATAAACTAAGTGAAGAGAATCTTATTTTGAAGAAAGAATTAGAAGAATTGCGTGCATTAAAAGTTGGACCATCAAACATTACTCAATCAAACAAAGCTGCAAATTGGACCATTTGTTCATCATGCAAGAAAATATGGAAGCCAAATGAAGGACACAACAATGAAGATGATGATGATGTGGTTAGAAAGAGCAGCTATAGCACCATAGAGATAGATTAG 669 0.3617 MDDDHHKSFTLDLNLGLGLGSYVQENVNKSLASSKDELTIGLNHHDKGNELSLKRVHEEQEAHTIDEEIAIDTTNDNNGCTKKLRLTKEQSTMLEDAFKLHNTINTAQKRALAEKLNLKQRQVEVWFQNRRARTKLKQTEVNYMFLKKCHDKLSEENLILKKELEELRALKVGPSNITQSNKAANWTICSSCKKIWKPNEGHNNEDDDDVVRKSSYSTIEID 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02170 222 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Trre4g02170 222 Pfam Homeodomain 83 135 IPR001356 GO:0003677
Trre4g02170 222 CDD homeodomain 82 138 IPR001356 GO:0003677
Trre4g02170 222 SUPERFAMILY Homeodomain-like 74 138 IPR009057 -
Trre4g02170 222 Gene3D - 87 134 - -
Trre4g02170 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 32 200 - -
Trre4g02170 222 SMART HOX_1 79 141 IPR001356 GO:0003677
Trre4g02170 222 Coils Coil 150 170 - -
Trre4g02170 222 SMART halz 137 180 IPR003106 GO:0006355|GO:0043565
Trre4g02170 222 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02170 Trre-Chr4 19827741 19829452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02170 80 205 Homeobox Transcription Factor Family AT4G17460 56.349 2.29e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre4g02170 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02170 K09338 - gmx:100790522 182.57