Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02151 ATGAGTTTTCTGAACGGTTCTTCACCTCGCCGGACTCCGACGCCGGAGAATACTGATATTGAAGCTGGTCCGTTGTCTCGCCGTTCTTCTGACGTTGATGACGACGGTAATTTTTCCGATCCGTTTGATATTGCTAGAACAAAGCACGCTTCTATTGATCGACTTCGCCGTTGGAGACAAGCGGCGCTTGTGCTGAATGCTTCCCGTCGATTTCGTTATACCTTGGACTTGAAGAAAGAAGAAGAGAAGAAGCAAACACTGAGAAAGATTAGAGCGCATGCACAAGCCATTAGAGCAGCATATCGTTTCAAAGCAGCTGGGGTGCAAGCGCAAGAACCTGGGCAAGGGCAAGTGAATGAAGCTATAAAACCCACTTCAACCTCTACTGGTGAATTTCCAATTGGACCAGAGCAACTTGCTTCGATTTCAAGGGAGCATGATACTGCTTCTTTGCTGCAATATGGAGGGGTTGCAGGGGTATCAAATTTATTGAAAACCGATTTAGAGAAGGGAATTAGTGGTGATGATGCCGACTTGCTAAGACGGAGGAATGCATTTGGTTCCAACAATTACCCTAGAAAGAAAGGAAGAAGTTTTATGATGTTTATGTGGGATGCTTGCAAGGACCTGACCTTGGTTATTTTAATGGTAGCTGCAGCAGCTTCATTGGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGGTGGTATGATGGGGGCAGCATTGCTTTTGCGGTTGTTCTTGTTATTGTTGTTACAGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAAGAGAAGAGAAATATACATCTGGAGGTTGTTAGAGGTGGTAGAAGGGTTGAGATCTCAATATACGACCTTGTTGTTGGGGATGTCATACCTCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTGTGATTACTGGTCACTCTCTTTCAATTGATGAATCAAGCATGACAGGGGAGAGCAAAATTGTCCATAAGGATTCCAAGGATCCCTTTATGATGTCTGGTTGTAAGGTTGCAGATGGCAGTGGCACTATGCTGGTAACGGGTGTTGGAATTAATACCGAGTGGGGCCTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCTTTGCAGGTCCGCTTGAATGGCGTAGCCACCTTCATTGGTATAGTCGGACTCACTGTTGCTGTTGTTGTCCTGATTGTGCTACTAGCCAGATATTTCTCCGGGCATACGAAGAATGCTGATGGGTCAAAACAATTTACAGCAGGCAGGACTAAAGTTGGGGATGCTGTTGATGGAGCAATTAAGATAATAACTGTTGCGGTCACCATTGTAGTTGTTGCAGTGCCTGAGGGGCTTCCACTTGCAGTCACTTTAACACTGGCCTACTCGATGAGAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGCTCTGCTACAACCATATGCAGTGATAAGACTGGCACATTGACTATGAATCAGATGACTGTGGTCGAGGTTTATGCCGGGGGAAGTAAGATTAATCCTCCTCACCAGTTGGAGAGCTCTCCTAAGCTACGCTCTCTACTCATTGAAGGTGTTGCACAAAACACTAATGGCAGTGTTTATGTCCCCGAGGGTGCTAATGATGTCGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTGCATTGGGGAATTAAGGTTGGGATGAATTTTGCGACTGATCGGTCAGAGTCATCAATTATACATGTCTTTCCATTTAACTCTGAAAAAAAAAGAGGCGGAGTTGCAGTACAGACGACTGATTCCGATGTTCATATACATTGGAAAGGTGCTGCTGAGATTGTTCTCGCTTGCTGTACAGGGTATATTGATGCAAATGACCAGTTGGTGGAGATGAGCGAGGAGAAGATGACTTTTTTCAAAAAAGCTATTGAAGACATGGCTGCTGAAAGTCTACGTTGTGTTGCCATTGCATATAGATCGTATGAGAAGGAGAAAGTTCCAGATAGTGAGGAACAACTTGCTCACTGGTCTTTGCCAGATGATGACCTTGTTTTACTAGCTATTGTTGGTATCAAGGACCCTTGTCGACCTGGTGTCAAAGATTCAGTACAGCTTTGCCAAAAAGCCGGTGTTAAGGTAAAGATGGTCACGGGTGACAATGTCAAGACTGCGAAGGCAATTGCTGTGGAATGTGGAATACTTAGTTCACTTGCTGATGCTACAGAGAGAACTGTCATTGAAGGAAAAACATTTCGGGCCTTGTCAGATTCAGAGAGAGAAGAAATTGCGGACTCGATATCGGTTATGGGAAGGTCATCTCCCAATGACAAACTATTGTTAGTACAAGCATTAAGGAGGAAGGGTCATGTTGTGGCTGTAACCGGTGATGGAACAAATGATGCTCCTGCACTTCATGAGGCGGATATTGGTCTTGCAATGGGTATTGCTGGTACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTCGGTCTGTTTATGCGAATATTCAGAAATTTATCCAGTTTCAGCTGACAGTCAATGTGGCAGCTCTTGTTATAAATGTTGTTGCTGCGGTTTCCTCTGGTGATGTTCCACTGAACGCAGTGCAGCTTCTCTGGGTGAATCTTATCATGGATACTCTGGGAGCACTAGCCTTGGCTACTGAACCGCCAACTGATCACCTGATGGATCGGACTCCTGTGGGCCGAAGAGAACCTCTCATAACAAATATTATGTGGAGGAATTTGCTGATACAGGCGATGTATCAAGTGTCTGTCTTGCTTGTTCTCAATTTCCGAGGTATAAGCATATTGGGTCTGGAGCATCAACGGCATGATCATGCAATCAAAGTAAAGAACACTTTGATCTTCAATGCATTTGTTCTCTGTCAGATCTTCAATGAATTTAATGCACGTAAGCCAGATGAATTCAACATTTTTAAAGGAGTCACCAAAAACTTCCTCTTTATGGGAATAGTGGGATTTACTGTTGTCCTTCAGGTTATCATTGTTGAATTTCTTGGGAAGTTCACTACAACTACTAGGCTTAATTGGAAGCAGTGGGTCATTTCTGTCGTTATTGGAGTCATTGGTTGGCCCCTTGCTGTGGTTGGGAAATTGATACCAGTACCAGAAACTCCCATCAATAACGTTTTCTCTAGAATTCGAAGAACTGAAAAAAAGAAGGAAACTGAGGCTTCTTAA 3279 0.4376 MSFLNGSSPRRTPTPENTDIEAGPLSRRSSDVDDDGNFSDPFDIARTKHASIDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKQTLRKIRAHAQAIRAAYRFKAAGVQAQEPGQGQVNEAIKPTSTSTGEFPIGPEQLASISREHDTASLLQYGGVAGVSNLLKTDLEKGISGDDADLLRRRNAFGSNNYPRKKGRSFMMFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVVLVIVVTAVSDYKQSLQFRDLNEEKRNIHLEVVRGGRRVEISIYDLVVGDVIPLNIGNQVPADGIVITGHSLSIDESSMTGESKIVHKDSKDPFMMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVVVLIVLLARYFSGHTKNADGSKQFTAGRTKVGDAVDGAIKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEVYAGGSKINPPHQLESSPKLRSLLIEGVAQNTNGSVYVPEGANDVEVSGSPTEKAILHWGIKVGMNFATDRSESSIIHVFPFNSEKKRGGVAVQTTDSDVHIHWKGAAEIVLACCTGYIDANDQLVEMSEEKMTFFKKAIEDMAAESLRCVAIAYRSYEKEKVPDSEEQLAHWSLPDDDLVLLAIVGIKDPCRPGVKDSVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILSSLADATERTVIEGKTFRALSDSEREEIADSISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGISILGLEHQRHDHAIKVKNTLIFNAFVLCQIFNEFNARKPDEFNIFKGVTKNFLFMGIVGFTVVLQVIIVEFLGKFTTTTRLNWKQWVISVVIGVIGWPLAVVGKLIPVPETPINNVFSRIRRTEKKKETEAS 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02151 1092 MobiDBLite consensus disorder prediction 1 15 - -
Trre4g02151 1092 SUPERFAMILY Calcium ATPase, transduction domain A 275 370 IPR008250 -
Trre4g02151 1092 MobiDBLite consensus disorder prediction 26 43 - -
Trre4g02151 1092 Gene3D - 50 105 - -
Trre4g02151 1092 FunFam Calcium-transporting ATPase 50 106 - -
Trre4g02151 1092 Pfam haloacid dehalogenase-like hydrolase 494 818 - -
Trre4g02151 1092 FunFam Calcium-transporting ATPase 9 plasma membrane-type 351 521 - -
Trre4g02151 1092 Pfam Cation transporting ATPase, C-terminus 889 1065 IPR006068 -
Trre4g02151 1092 SUPERFAMILY HAD-like 495 909 IPR036412 -
Trre4g02151 1092 CDD P-type_ATPase_Ca_PMCA-like 179 937 - -
Trre4g02151 1092 SUPERFAMILY Calcium ATPase, transmembrane domain M 154 1067 IPR023298 -
Trre4g02151 1092 ProSitePatterns E1-E2 ATPases phosphorylation site. 499 505 IPR018303 -
Trre4g02151 1092 SMART Cation_ATPase_N_a_2 153 227 IPR004014 -
Trre4g02151 1092 Pfam Cation transporter/ATPase, N-terminus 155 222 IPR004014 -
Trre4g02151 1092 MobiDBLite consensus disorder prediction 1 43 - -
Trre4g02151 1092 FunFam Calcium-transporting ATPase 253 373 - -
Trre4g02151 1092 FunFam Calcium-transporting ATPase 821 1070 - -
Trre4g02151 1092 PANTHER CATION TRANSPORTING ATPASE 120 1068 - -
Trre4g02151 1092 NCBIfam HAD-IC family P-type ATPase 437 520 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g02151 1092 NCBIfam HAD-IC family P-type ATPase 770 884 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g02151 1092 Pfam E1-E2 ATPase 275 475 - -
Trre4g02151 1092 NCBIfam calcium-translocating P-type ATPase, PMCA-type 145 1068 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre4g02151 1092 Gene3D - 178 373 - -
Trre4g02151 1092 FunFam Calcium-transporting ATPase 507 704 - -
Trre4g02151 1092 Pfam Ca2+-ATPase N terminal autoinhibitory domain 40 82 IPR024750 GO:0005516
Trre4g02151 1092 Gene3D - 494 849 IPR023214 -
Trre4g02151 1092 SFLD p-type atpase 479 856 IPR044492 -
Trre4g02151 1092 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 504 701 IPR023299 GO:0000166
Trre4g02151 1092 PRINTS P-type cation-transporting ATPase superfamily signature 804 823 - -
Trre4g02151 1092 PRINTS P-type cation-transporting ATPase superfamily signature 321 335 - -
Trre4g02151 1092 PRINTS P-type cation-transporting ATPase superfamily signature 828 840 - -
Trre4g02151 1092 PRINTS P-type cation-transporting ATPase superfamily signature 497 511 - -
Trre4g02151 1092 PRINTS P-type cation-transporting ATPase superfamily signature 697 708 - -
Trre4g02151 1092 PRINTS P-type cation-transporting ATPase superfamily signature 719 729 - -
Trre4g02151 1092 Gene3D - 507 704 IPR023299 GO:0000166
Trre4g02151 1092 FunFam Calcium-transporting ATPase 697 849 - -
Trre4g02151 1092 SFLD Haloacid Dehalogenase 479 856 - -
Trre4g02151 1092 Gene3D - 205 1055 - -
Trre4g02151 1092 PRINTS Sodium/potassium-transporting ATPase signature 240 260 - -
Trre4g02151 1092 PRINTS Sodium/potassium-transporting ATPase signature 615 633 - -
Trre4g02151 1092 PRINTS Sodium/potassium-transporting ATPase signature 490 511 - -
Trre4g02151 1092 FunFam Calcium-transporting ATPase 205 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02151 Trre-Chr4 19575045 19589345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02151 1 1089 Primary Pumps ATPases AT5G57110 73.761 0.0 1615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02151 K01537 - gmx:100792945 1828.53