Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02147 ATGGACTTGTCAAGAAACATGGCTGCTCCTCAACAAGAAGGCTGTAAGAAACAAAAAAGAGCAGACAAGACAAGTAGATTGGAAGAAATATTCACGACACTCGAACATCCGTCCGAGATCCAAAGAAGTGAGATAGCCAAAGAACTTGGACTTCAACCAAGACAAGTTCAGTTTTGGTTTCAAAATCGACGGACTGTAAAAAAGGCTCAAAATGAGAAAGCAACTCGCAATGAACTTCGTGCTGAATATGAAAGACTTCACAATGAAAACATCCAGATGAAGGAGCAATTGAAGAATATTCTTTGCATAACATGTGGCCGTAGACTTTGTAAGAATCATGAGATGGAACAACTTCAGCTTGAAAATGCTCGTCTCAAAGAAGAGGTAAGTTAA 393 0.3919 MDLSRNMAAPQQEGCKKQKRADKTSRLEEIFTTLEHPSEIQRSEIAKELGLQPRQVQFWFQNRRTVKKAQNEKATRNELRAEYERLHNENIQMKEQLKNILCITCGRRLCKNHEMEQLQLENARLKEEVS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02147 130 SMART HOX_1 18 74 IPR001356 GO:0003677
Trre4g02147 130 ProSiteProfiles 'Homeobox' domain profile. 27 70 IPR001356 GO:0003677
Trre4g02147 130 Coils Coil 62 96 - -
Trre4g02147 130 MobiDBLite consensus disorder prediction 1 22 - -
Trre4g02147 130 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 129 IPR042160 -
Trre4g02147 130 Coils Coil 108 130 - -
Trre4g02147 130 Gene3D - 19 69 - -
Trre4g02147 130 PRINTS Lambda-repressor HTH signature 41 50 IPR000047 GO:0003677
Trre4g02147 130 PRINTS Lambda-repressor HTH signature 50 66 IPR000047 GO:0003677
Trre4g02147 130 SUPERFAMILY Homeodomain-like 21 71 IPR009057 -
Trre4g02147 130 CDD homeodomain 22 71 IPR001356 GO:0003677
Trre4g02147 130 Pfam Homeodomain 21 67 IPR001356 GO:0003677
Trre4g02147 130 ProSitePatterns 'Homeobox' domain signature. 45 68 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02147 Trre-Chr4 19430053 19431684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02147 16 129 Homeobox Transcription Factor Family AT1G73360 42.623 1.66e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre4g02147 Homeodomain 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02147 K09338 - gmx:100794552 119.783