Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02146 ATGAAGAGTATCATCAAGAAGGTGAGCGAACTCGCCATTCTTTGCAATATTCCAGCCTGTGCTATAATTTCTAATCCTTTTAATTCTAAACCAGAGGTGTGGCCGAATCTAGAGGGAGCCAAGCAGGTGATTAAGAGGTATCAAAATTCACCTATGATAGATGAAGCAAAAAATGTGACTTTAGAGAGCCTTCTCTTGCAGAAGATTACTAAAGCCAGAGAGAAACTTGAAAAGAAAAGGCAAGAGACTCGTGAGAAGGAGTTGACCATTCGTATGATTGAGTTCATGAAAAATAAAAATCTGCCTAATGATCTATCTGTTTCAGATTTGAAAGACTTAGATAAGCTAAGTGAGAAGCATCTCAAAGATATTGATAACAAGATTGTTGAGCTAAATGGATCCAATTAG 408 0.3701 MKSIIKKVSELAILCNIPACAIISNPFNSKPEVWPNLEGAKQVIKRYQNSPMIDEAKNVTLESLLLQKITKAREKLEKKRQETREKELTIRMIEFMKNKNLPNDLSVSDLKDLDKLSEKHLKDIDNKIVELNGSN 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02146 135 Gene3D - 1 100 IPR036879 GO:0003677|GO:0046983
Trre4g02146 135 SUPERFAMILY SRF-like 3 59 IPR036879 GO:0003677|GO:0046983
Trre4g02146 135 Coils Coil 62 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02146 Trre-Chr4 19397601 19398008 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02146 8 128 Type I MADS-box Gene Family AT5G48670 38.525 3.90e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre4g02146 SRF-TF 4.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02146 - - gmx:100792290 149.443