Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02145 ATGACGAGGAAGAAGTTGAAACTTGCCTTTTTGTCCGATGATAAAGCAAGGAAGGCAACTTATAAGAAAAGAATGAAGAGTATCATCAAGAAGGTGAGCGAACTCGCCATTCTTTGCAATATTCCAGCCTGTGCTATAATTTCAAATCCTTTTAATTCTAAACCAGAGGTGTGGCCGAATCTAGAGGGAGCCAAGCAGGTGATTAAGAGGTATCAAAATTCACCTATGATAGATGAAGCAAAAAATGTGAGTTCAGAGAGCCTTCTCTTGCAGAAGATTACTAAAGCCAGAGAGAAACTTGAAAAGAAAAGGCAAGAGACTCGTGAGAAGGAGTTGACCATTCGTATGATTGAGTTCATGAAAAATAAAAATTTGCCTAATGATCTATCTGTTTCAGATTTGAAAGACTTTGATAAGCTAAGTGAGAAGCATCTCAAAGATATTGATAACAAGATTGTTGAGCTAAATGGATCCAATTAG 480 0.3708 MTRKKLKLAFLSDDKARKATYKKRMKSIIKKVSELAILCNIPACAIISNPFNSKPEVWPNLEGAKQVIKRYQNSPMIDEAKNVSSESLLLQKITKAREKLEKKRQETREKELTIRMIEFMKNKNLPNDLSVSDLKDFDKLSEKHLKDIDNKIVELNGSN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02145 159 Gene3D - 13 124 IPR036879 GO:0003677|GO:0046983
Trre4g02145 159 Coils Coil 86 113 - -
Trre4g02145 159 PANTHER MADS BOX PROTEIN 3 152 - -
Trre4g02145 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trre4g02145 159 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre4g02145 159 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Trre4g02145 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre4g02145 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02145 Trre-Chr4 19327247 19327726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02145 1 152 Type I MADS-box Gene Family AT5G48670 43.137 3.12e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre4g02145 SRF-TF 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02145 - - gmx:100792290 189.119