Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02136 ATGGAGAATATTGGTGATGAGTACAAGCATTACAAGCATTACTGGGAAACCAACATGTTCCTCCAAACCCAAGAACTTGACAGCTGGGGATTGGATGAAGCTTTTTCAGGATACTATGATTCAAGCTCTCCTGATGGTGCAGCTTCATCAGCAGCTTCATCTAAGAACATTGTTTCTGAAAGGAATAGAAGGAAGAAGCTTAATGAAAGACTCTTTGCACTTAGATCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCAATTATTAAGGATGCAATTGAGTACATACAACACTTACATGAGCAAGAGAAGATTATTCAAGCTGAAATAATGGAACTTGAATCAGGGATGCCAAATAATATTAATCCAAATTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAATTGTATGATTCTGTCAATTCAAGAAACTTTCCTATTGAAGTCCTTGAGCTTAGGGTGACATATATGGGAGAGAATACAATTGTAGTGAGCTTGACATGTAGCAAAAGGACAGACACAATGGTAAAATTGTGTGAAGTGTTCGAATCTTTGAAGCTTAAGATTATTACAGCCAATATCACTTCCTTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGGAAATGAAGAAGAGAAAGATCTATTGCAGGTAAAGATCGGAACAGCTATTGCAGCTCTTAATGATCCTCTAAGCCCTATGAGCATCTAA 744 0.3804 MENIGDEYKHYKHYWETNMFLQTQELDSWGLDEAFSGYYDSSSPDGAASSAASSKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLHEQEKIIQAEIMELESGMPNNINPNYDFDQELPVLLRSKKKRTDQLYDSVNSRNFPIEVLELRVTYMGENTIVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEGNEEEKDLLQVKIGTAIAALNDPLSPMSI 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02136 247 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 42 231 - -
Trre4g02136 247 Gene3D - 47 116 IPR036638 GO:0046983
Trre4g02136 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Trre4g02136 247 Pfam Helix-loop-helix DNA-binding domain 58 101 IPR011598 GO:0046983
Trre4g02136 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 117 IPR036638 GO:0046983
Trre4g02136 247 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 47 117 - -
Trre4g02136 247 SMART finulus 57 106 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02136 Trre-Chr4 18993574 19002252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02136 1 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 65.000 1.00e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre4g02136 HLH 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02136 - - gmx:100817978 388.267